KEGG   PATHWAY: lfi00020
Entry
lfi00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Leptospirillum ferriphilum ML-04
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
lfi00020  Citrate cycle (TCA cycle)
lfi00020

Other DBs
GO: 0006099
Organism
Leptospirillum ferriphilum ML-04 [GN:lfi]
Gene
LFML04_0820  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
LFML04_1212  isocitrate dehydrogenase (NAD+) [KO:K00030] [EC:1.1.1.41]
LFML04_1324  pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase component [KO:K00382] [EC:1.8.1.4]
LFML04_0159  putative dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
LFML04_0819  sucD1; succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
LFML04_0826  succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
LFML04_0825  sucC; succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
LFML04_1484  fumC; fumarate hydratase class II(FumC) [KO:K01679] [EC:4.2.1.2]
LFML04_1134  mdh2; malate/lactate dehydrogenase [KO:K00024] [EC:1.1.1.37]
LFML04_2418  Pyruvate ferredoxin oxidoreductase [KO:K00169] [EC:1.2.7.1]
LFML04_2424  forA2; pyruvate:ferredoxin oxidoreductase alpha subunit [KO:K00169] [EC:1.2.7.1]
LFML04_2417  Pyruvate ferredoxin oxidoreductase [KO:K00170] [EC:1.2.7.1]
LFML04_2423  forB2; Pyruvate synthase beta subunit/Pyruvate ferredoxin oxidoreductase [KO:K00170] [EC:1.2.7.1]
LFML04_2422  forG2; pyruvate ferredoxin oxidoreductase gamma subunit [KO:K00172] [EC:1.2.7.1]
LFML04_2416  forG1; Pyruvate:ferredoxin oxidoreductase gamma subunit [KO:K00172] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
lfi00010  Glycolysis / Gluconeogenesis
lfi00053  Ascorbate and aldarate metabolism
lfi00061  Fatty acid biosynthesis
lfi00071  Fatty acid degradation
lfi00190  Oxidative phosphorylation
lfi00220  Arginine biosynthesis
lfi00250  Alanine, aspartate and glutamate metabolism
lfi00280  Valine, leucine and isoleucine degradation
lfi00350  Tyrosine metabolism
lfi00470  D-Amino acid metabolism
lfi00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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