KEGG   PATHWAY: lfs00020
Entry
lfs00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Limnospira fusiformis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
lfs00020  Citrate cycle (TCA cycle)
lfs00020

Module
lfs_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:lfs00020]
lfs_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:lfs00020]
lfs_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:lfs00020]
Other DBs
GO: 0006099
Organism
Limnospira fusiformis [GN:lfs]
Gene
HFV01_24120  citrate synthase [KO:K01647] [EC:2.3.3.1]
HFV01_11285  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
HFV01_20815  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
HFV01_11370  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
HFV01_22885  CoA-binding protein [KO:K01902] [EC:6.2.1.5]
HFV01_22880  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
HFV01_17640  succinate dehydrogenase/fumarate reductase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
HFV01_10235  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
HFV01_26155  heterodisulfide reductase [KO:K00241]
HFV01_13015  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
HFV01_13100  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
HFV01_20825  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
HFV01_04920  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
HFV01_25325  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
HFV01_07245  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
HFV01_05535  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
lfs00010  Glycolysis / Gluconeogenesis
lfs00053  Ascorbate and aldarate metabolism
lfs00061  Fatty acid biosynthesis
lfs00071  Fatty acid degradation
lfs00190  Oxidative phosphorylation
lfs00220  Arginine biosynthesis
lfs00250  Alanine, aspartate and glutamate metabolism
lfs00280  Valine, leucine and isoleucine degradation
lfs00350  Tyrosine metabolism
lfs00470  D-Amino acid metabolism
lfs00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system