KEGG   PATHWAY: lper00630
Entry
lper00630                   Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Lolium perenne (perennial ryegrass)
Class
Metabolism; Carbohydrate metabolism
Pathway map
lper00630  Glyoxylate and dicarboxylate metabolism
lper00630

Module
lper_M00012  Glyoxylate cycle [PATH:lper00630]
lper_M00532  Photorespiration [PATH:lper00630]
lper_M00621  Glycine cleavage system [PATH:lper00630]
Other DBs
GO: 0046487 0043648
Organism
Lolium perenne (perennial ryegrass) [GN:lper]
Gene
127333272  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
127321113  acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal-like [KO:K01895] [EC:6.2.1.1]
127334656  acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal-like [KO:K01895] [EC:6.2.1.1]
127295652  acetate--CoA ligase CCL3-like [KO:K01913] [EC:6.2.1.1 6.2.1.2]
127295653  acetate--CoA ligase CCL3-like [KO:K01913] [EC:6.2.1.1 6.2.1.2]
127335328  malate synthase [KO:K01638] [EC:2.3.3.9]
127335844  malate dehydrogenase-like [KO:K00025] [EC:1.1.1.37]
127300519  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
127343139  malate dehydrogenase 1, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
127301695  malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
127326333  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
127327740  malate dehydrogenase 1, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
127292626  malate dehydrogenase, glyoxysomal-like [KO:K00026] [EC:1.1.1.37]
127320773  citrate synthase, glyoxysomal-like [KO:K01647] [EC:2.3.3.1]
127307561  citrate synthase 4, mitochondrial-like [KO:K01647] [EC:2.3.3.1]
127314620  putative aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
127325714  putative aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
127340724  acetyl-CoA acetyltransferase, cytosolic 1-like isoform X1 [KO:K00626] [EC:2.3.1.9]
127300405  acetyl-CoA acetyltransferase, cytosolic 1-like [KO:K00626] [EC:2.3.1.9]
127330993  acetyl-CoA acetyltransferase, cytosolic 1-like [KO:K00626] [EC:2.3.1.9]
127337067  glycolate oxidase 3 [KO:K11517] [EC:1.1.3.15]
127332669  peroxisomal (S)-2-hydroxy-acid oxidase GLO4-like [KO:K11517] [EC:1.1.3.15]
127292510  glycolate oxidase 1 isoform X1 [KO:K11517] [EC:1.1.3.15]
127333797  glycolate oxidase 5 [KO:K11517] [EC:1.1.3.15]
127313655  catalase isozyme 1 [KO:K03781] [EC:1.11.1.6]
127297202  catalase-1 [KO:K03781] [EC:1.11.1.6]
127308828  catalase isozyme 2 [KO:K03781] [EC:1.11.1.6]
127320779  glyoxylate/hydroxypyruvate reductase HPR3-like [KO:K15919] [EC:1.1.1.79 1.1.1.81]
127330970  glyoxylate/hydroxypyruvate reductase HPR3-like [KO:K15919] [EC:1.1.1.79 1.1.1.81]
127330975  glyoxylate/hydroxypyruvate reductase HPR3-like isoform X1 [KO:K15919] [EC:1.1.1.79 1.1.1.81]
127330977  uncharacterized protein LOC127330977 isoform X1 [KO:K15919] [EC:1.1.1.79 1.1.1.81]
127330991  glyoxylate/hydroxypyruvate reductase HPR3-like [KO:K15919] [EC:1.1.1.79 1.1.1.81]
127342710  glyoxylate/succinic semialdehyde reductase 2, chloroplastic [KO:K18121] [EC:1.1.1.79 1.1.1.-]
127334449  glyoxylate/succinic semialdehyde reductase 1 [KO:K18121] [EC:1.1.1.79 1.1.1.-]
127335358  phosphoglycolate phosphatase 1A, chloroplastic-like [KO:K19269] [EC:3.1.3.18 3.1.3.48]
127300431  phosphoglycolate phosphatase 2-like [KO:K19269] [EC:3.1.3.18 3.1.3.48]
5696636  rbcL; ribulose 1,5-bisphosphate carboxylase/oxygenase large subunit [KO:K01601] [EC:4.1.1.39]
127296254  ribulose bisphosphate carboxylase small subunit, chloroplastic 1-like [KO:K01602] [EC:4.1.1.39]
127331103  ribulose bisphosphate carboxylase small subunit, chloroplastic 1-like [KO:K01602] [EC:4.1.1.39]
127331104  ribulose bisphosphate carboxylase small subunit, chloroplastic 1-like [KO:K01602] [EC:4.1.1.39]
127331107  ribulose bisphosphate carboxylase small subunit, chloroplastic 1 [KO:K01602] [EC:4.1.1.39]
127331108  ribulose bisphosphate carboxylase small subunit, chloroplastic 1-like [KO:K01602] [EC:4.1.1.39]
127331180  ribulose bisphosphate carboxylase small subunit, chloroplastic-like [KO:K01602] [EC:4.1.1.39]
127316893  serine--glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
127334108  glutamate--glyoxylate aminotransferase 1 [KO:K14272] [EC:2.6.1.4 2.6.1.2 2.6.1.44]
127331782  ferredoxin-dependent glutamate synthase, chloroplastic isoform X1 [KO:K00284] [EC:1.4.7.1]
127336811  glutamine synthetase, chloroplastic [KO:K01915] [EC:6.3.1.2]
127296440  glutamine synthetase root isozyme 1-like [KO:K01915] [EC:6.3.1.2]
127296441  glutamine synthetase root isozyme 1 [KO:K01915] [EC:6.3.1.2]
127306219  glutamine synthetase cytosolic isozyme 1-1 [KO:K01915] [EC:6.3.1.2]
127293176  glutamine synthetase cytosolic isozyme 1-3 [KO:K01915] [EC:6.3.1.2]
127293668  serine hydroxymethyltransferase, mitochondrial [KO:K00600] [EC:2.1.2.1]
127295011  serine hydroxymethyltransferase 4 [KO:K00600] [EC:2.1.2.1]
127344183  serine hydroxymethyltransferase 7-like [KO:K00600] [EC:2.1.2.1]
127345899  serine hydroxymethyltransferase 4-like [KO:K00600] [EC:2.1.2.1]
127327809  serine hydroxymethyltransferase 4-like [KO:K00600] [EC:2.1.2.1]
127343572  glycine dehydrogenase (decarboxylating), mitochondrial-like [KO:K00281] [EC:1.4.4.2]
127337074  aminomethyltransferase, mitochondrial [KO:K00605] [EC:2.1.2.10]
127326972  dihydrolipoyl dehydrogenase 1, mitochondrial-like [KO:K00382] [EC:1.8.1.4]
127327076  dihydrolipoyl dehydrogenase 1, chloroplastic-like [KO:K00382] [EC:1.8.1.4]
127291795  dihydrolipoyl dehydrogenase 2, chloroplastic-like isoform X1 [KO:K00382] [EC:1.8.1.4]
127292417  dihydrolipoyl dehydrogenase 1, mitochondrial-like [KO:K00382] [EC:1.8.1.4]
127305771  glycine cleavage system H protein, mitochondrial [KO:K02437]
127308002  glycine cleavage system H protein 2, mitochondrial [KO:K02437]
127343359  D-glycerate 3-kinase, chloroplastic [KO:K15918] [EC:2.7.1.31]
127317008  formate dehydrogenase, mitochondrial [KO:K00122] [EC:1.17.1.9]
127306472  formate dehydrogenase 1, mitochondrial-like [KO:K00122] [EC:1.17.1.9]
127297461  formyltetrahydrofolate deformylase 2, mitochondrial-like [KO:K01433] [EC:3.5.1.10]
127339870  uncharacterized protein LOC127339870 [KO:K01455] [EC:3.5.1.49]
127343695  uncharacterized protein LOC127343695 [KO:K01455] [EC:3.5.1.49]
127343696  uncharacterized protein LOC127343696 [KO:K01455] [EC:3.5.1.49]
127343697  uncharacterized protein LOC127343697 [KO:K01455] [EC:3.5.1.49]
127336623  oxalate--CoA ligase [KO:K22133] [EC:6.2.1.8]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
lper00010  Glycolysis / Gluconeogenesis
lper00020  Citrate cycle (TCA cycle)
lper00030  Pentose phosphate pathway
lper00053  Ascorbate and aldarate metabolism
lper00071  Fatty acid degradation
lper00230  Purine metabolism
lper00250  Alanine, aspartate and glutamate metabolism
lper00260  Glycine, serine and threonine metabolism
lper00620  Pyruvate metabolism
lper00710  Carbon fixation by Calvin cycle
lper00750  Vitamin B6 metabolism
lper00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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