KEGG   PATHWAY: lrd00630
Entry
lrd00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Lolium rigidum (rigid ryegrass)
Class
Metabolism; Carbohydrate metabolism
Pathway map
lrd00630  Glyoxylate and dicarboxylate metabolism
lrd00630

Module
lrd_M00012  Glyoxylate cycle [PATH:lrd00630]
lrd_M00621  Glycine cleavage system [PATH:lrd00630]
Other DBs
GO: 0046487 0043648
Organism
Lolium rigidum (rigid ryegrass) [GN:lrd]
Gene
124669303  isocitrate lyase [KO:K01637] [EC:4.1.3.1 4.1.3.30]
124692316  acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal [KO:K01895] [EC:6.2.1.1]
124669167  acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal-like isoform X1 [KO:K01895] [EC:6.2.1.1]
124702210  acetate--CoA ligase CCL3-like [KO:K01913] [EC:6.2.1.1 6.2.1.2]
124702211  acetate--CoA ligase CCL3-like [KO:K01913] [EC:6.2.1.1 6.2.1.2]
124702227  acetate--CoA ligase CCL3-like [KO:K01913] [EC:6.2.1.1 6.2.1.2]
124702228  acetate--CoA ligase CCL3-like [KO:K01913] [EC:6.2.1.1 6.2.1.2]
124674204  malate synthase-like [KO:K01638] [EC:2.3.3.9]
124675059  malate synthase [KO:K01638] [EC:2.3.3.9]
124705569  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
124674218  malate dehydrogenase-like isoform X1 [KO:K00025] [EC:1.1.1.37]
124676183  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
124652233  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
124652279  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
124682611  malate dehydrogenase, chloroplastic-like [KO:K00026] [EC:1.1.1.37]
124682638  malate dehydrogenase, chloroplastic-like [KO:K00026] [EC:1.1.1.37]
124704425  malate dehydrogenase, glyoxysomal-like [KO:K00026] [EC:1.1.1.37]
124706054  malate dehydrogenase 1, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
124660575  malate dehydrogenase 1, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
124707041  malate dehydrogenase 1, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
124691920  citrate synthase 4, mitochondrial-like [KO:K01647] [EC:2.3.3.1]
124692000  citrate synthase 4, mitochondrial-like [KO:K01647] [EC:2.3.3.1]
124692098  citrate synthase, glyoxysomal-like [KO:K01647] [EC:2.3.3.1]
124692101  citrate synthase, glyoxysomal-like [KO:K01647] [EC:2.3.3.1]
124701365  putative aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
124701392  putative aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
124688961  putative aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
124676529  putative aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
124652828  acetyl-CoA acetyltransferase, cytosolic 1-like [KO:K00626] [EC:2.3.1.9]
124674268  acetyl-CoA acetyltransferase, cytosolic 1-like [KO:K00626] [EC:2.3.1.9]
124661093  acetyl-CoA acetyltransferase, cytosolic 1-like [KO:K00626] [EC:2.3.1.9]
124661114  acetyl-CoA acetyltransferase, cytosolic 1-like [KO:K00626] [EC:2.3.1.9]
124674765  acetyl-CoA acetyltransferase, cytosolic 1-like [KO:K00626] [EC:2.3.1.9]
124670116  glycolate oxidase 5-like [KO:K11517] [EC:1.1.3.15]
124670410  glycolate oxidase 5 [KO:K11517] [EC:1.1.3.15]
124704474  glycolate oxidase 1 [KO:K11517] [EC:1.1.3.15]
124704498  glycolate oxidase 1-like [KO:K11517] [EC:1.1.3.15]
124673803  glycolate oxidase 3 [KO:K11517] [EC:1.1.3.15]
124673844  glycolate oxidase 3 [KO:K11517] [EC:1.1.3.15]
124674689  peroxisomal (S)-2-hydroxy-acid oxidase GLO4 [KO:K11517] [EC:1.1.3.15]
124701312  catalase-1-like [KO:K03781] [EC:1.11.1.6]
124701321  catalase-1 [KO:K03781] [EC:1.11.1.6]
124702128  catalase isozyme 1 [KO:K03781] [EC:1.11.1.6]
124702142  catalase isozyme 1-like isoform X1 [KO:K03781] [EC:1.11.1.6]
124691473  catalase isozyme 2 isoform X1 [KO:K03781] [EC:1.11.1.6]
124691596  catalase isozyme 2-like [KO:K03781] [EC:1.11.1.6]
124679018  glyoxylate/hydroxypyruvate reductase HPR3-like [KO:K15919] [EC:1.1.1.79 1.1.1.81]
124678688  glyoxylate/hydroxypyruvate reductase HPR3-like [KO:K15919] [EC:1.1.1.79 1.1.1.81]
124673059  glyoxylate/hydroxypyruvate reductase HPR3-like [KO:K15919] [EC:1.1.1.79 1.1.1.81]
124673063  glyoxylate/hydroxypyruvate reductase HPR3-like [KO:K15919] [EC:1.1.1.79 1.1.1.81]
124673064  glyoxylate/hydroxypyruvate reductase HPR3-like [KO:K15919] [EC:1.1.1.79 1.1.1.81]
124673318  glyoxylate/hydroxypyruvate reductase HPR3-like [KO:K15919] [EC:1.1.1.79 1.1.1.81]
124673320  glyoxylate/hydroxypyruvate reductase HPR3-like [KO:K15919] [EC:1.1.1.79 1.1.1.81]
124686919  glyoxylate/hydroxypyruvate reductase HPR3-like [KO:K15919] [EC:1.1.1.79 1.1.1.81]
124673473  glyoxylate/hydroxypyruvate reductase HPR3-like [KO:K15919] [EC:1.1.1.79 1.1.1.81]
124674111  glyoxylate/hydroxypyruvate reductase HPR3-like isoform X1 [KO:K15919] [EC:1.1.1.79 1.1.1.81]
124674112  glyoxylate/hydroxypyruvate reductase HPR3-like [KO:K15919] [EC:1.1.1.79 1.1.1.81]
124675854  glyoxylate/hydroxypyruvate reductase HPR3-like [KO:K15919] [EC:1.1.1.79 1.1.1.81]
124664044  glyoxylate/hydroxypyruvate reductase HPR3-like [KO:K15919] [EC:1.1.1.79 1.1.1.81]
124674704  glyoxylate/hydroxypyruvate reductase HPR3-like [KO:K15919] [EC:1.1.1.79 1.1.1.81]
124672842  glyoxylate/hydroxypyruvate reductase HPR3-like [KO:K15919] [EC:1.1.1.79 1.1.1.81]
124676807  glyoxylate/hydroxypyruvate reductase HPR3-like [KO:K15919] [EC:1.1.1.79 1.1.1.81]
124678707  glyoxylate/hydroxypyruvate reductase HPR3-like [KO:K15919] [EC:1.1.1.79 1.1.1.81]
124692083  glyoxylate/succinic semialdehyde reductase 1-like [KO:K18121] [EC:1.1.1.79 1.1.1.-]
124665867  glyoxylate/succinic semialdehyde reductase 2, chloroplastic [KO:K18121] [EC:1.1.1.79 1.1.1.-]
124692410  glyoxylate/succinic semialdehyde reductase 1-like [KO:K18121] [EC:1.1.1.79 1.1.1.-]
124691388  glycerate dehydrogenase [KO:K15893] [EC:1.1.1.29]
124691523  glycerate dehydrogenase-like [KO:K15893] [EC:1.1.1.29]
124701892  phosphoglycolate phosphatase 1A, chloroplastic-like [KO:K19269] [EC:3.1.3.18 3.1.3.48]
124653929  phosphoglycolate phosphatase 2-like [KO:K19269] [EC:3.1.3.18 3.1.3.48]
124654931  phosphoglycolate phosphatase 2-like [KO:K19269] [EC:3.1.3.18 3.1.3.48]
124673680  phosphoglycolate phosphatase 1A, chloroplastic-like [KO:K19269] [EC:3.1.3.18 3.1.3.48]
124678806  ribulose bisphosphate carboxylase small subunit, chloroplastic-like [KO:K01602] [EC:4.1.1.39]
124679485  ribulose bisphosphate carboxylase small subunit, chloroplastic 1 [KO:K01602] [EC:4.1.1.39]
124701867  ribulose bisphosphate carboxylase small subunit, chloroplastic 1-like [KO:K01602] [EC:4.1.1.39]
124701927  ribulose bisphosphate carboxylase small subunit, chloroplastic 1-like [KO:K01602] [EC:4.1.1.39]
124669534  ribulose bisphosphate carboxylase small subunit, chloroplastic 1-like [KO:K01602] [EC:4.1.1.39]
124670048  ribulose bisphosphate carboxylase small subunit, chloroplastic 1-like [KO:K01602] [EC:4.1.1.39]
124673773  ribulose bisphosphate carboxylase small subunit, chloroplastic-like [KO:K01602] [EC:4.1.1.39]
124674361  ribulose bisphosphate carboxylase small subunit, chloroplastic 1-like [KO:K01602] [EC:4.1.1.39]
124674363  ribulose bisphosphate carboxylase small subunit, chloroplastic 1-like [KO:K01602] [EC:4.1.1.39]
124674364  ribulose bisphosphate carboxylase small subunit, chloroplastic 1-like [KO:K01602] [EC:4.1.1.39]
124674365  ribulose bisphosphate carboxylase small subunit, chloroplastic 1-like [KO:K01602] [EC:4.1.1.39]
124675839  ribulose bisphosphate carboxylase small subunit, chloroplastic 1-like [KO:K01602] [EC:4.1.1.39]
124675841  ribulose bisphosphate carboxylase small subunit, chloroplastic 1-like [KO:K01602] [EC:4.1.1.39]
124676410  ribulose bisphosphate carboxylase small subunit, chloroplastic 1 [KO:K01602] [EC:4.1.1.39]
124691907  serine--glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
124694910  serine--glyoxylate aminotransferase-like [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
124673839  glutamate--glyoxylate aminotransferase 1 [KO:K14272] [EC:2.6.1.4 2.6.1.2 2.6.1.44]
124674655  glutamate--glyoxylate aminotransferase 1-like [KO:K14272] [EC:2.6.1.4 2.6.1.2 2.6.1.44]
124670619  ferredoxin-dependent glutamate synthase, chloroplastic-like isoform X1 [KO:K00284] [EC:1.4.7.1]
124670718  ferredoxin-dependent glutamate synthase, chloroplastic isoform X1 [KO:K00284] [EC:1.4.7.1]
124678413  glutamine synthetase, chloroplastic [KO:K01915] [EC:6.3.1.2]
124693074  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
124701786  glutamine synthetase root isozyme 1-like [KO:K01915] [EC:6.3.1.2]
124701832  glutamine synthetase root isozyme 1 [KO:K01915] [EC:6.3.1.2]
124701833  glutamine synthetase root isozyme 1-like [KO:K01915] [EC:6.3.1.2]
124669449  glutamine synthetase, chloroplastic [KO:K01915] [EC:6.3.1.2]
124704076  glutamine synthetase PR-2 isoform X1 [KO:K01915] [EC:6.3.1.2]
124704094  glutamine synthetase PR-2-like isoform X1 [KO:K01915] [EC:6.3.1.2]
124702789  serine hydroxymethyltransferase 4 [KO:K00600] [EC:2.1.2.1]
124704271  serine hydroxymethyltransferase, mitochondrial [KO:K00600] [EC:2.1.2.1]
124706993  serine hydroxymethyltransferase 4-like [KO:K00600] [EC:2.1.2.1]
124661720  serine hydroxymethyltransferase 7-like [KO:K00600] [EC:2.1.2.1]
124661931  serine hydroxymethyltransferase 7-like [KO:K00600] [EC:2.1.2.1]
124667198  glycine dehydrogenase (decarboxylating), mitochondrial-like [KO:K00281] [EC:1.4.4.2]
124660045  glycine dehydrogenase (decarboxylating), mitochondrial-like [KO:K00281] [EC:1.4.4.2]
124679058  aminomethyltransferase, mitochondrial-like [KO:K00605] [EC:2.1.2.10]
124669881  aminomethyltransferase, mitochondrial-like [KO:K00605] [EC:2.1.2.10]
124706791  leghemoglobin reductase-like [KO:K00382] [EC:1.8.1.4]
124660301  dihydrolipoyl dehydrogenase 1, chloroplastic-like [KO:K00382] [EC:1.8.1.4]
124707935  dihydrolipoyl dehydrogenase 2, chloroplastic-like isoform X1 [KO:K00382] [EC:1.8.1.4]
124646611  dihydrolipoyl dehydrogenase 1, mitochondrial-like [KO:K00382] [EC:1.8.1.4]
124662671  dihydrolipoyl dehydrogenase 1, mitochondrial-like [KO:K00382] [EC:1.8.1.4]
124662672  dihydrolipoyl dehydrogenase 1, mitochondrial-like [KO:K00382] [EC:1.8.1.4]
124686500  glycine cleavage system H protein 2, mitochondrial-like [KO:K02437]
124686501  glycine cleavage system H protein 2, mitochondrial-like [KO:K02437]
124705879  glycine cleavage system H protein, mitochondrial-like [KO:K02437]
124705890  glycine cleavage system H protein, mitochondrial [KO:K02437]
124659971  D-glycerate 3-kinase, chloroplastic-like [KO:K15918] [EC:2.7.1.31]
124660138  D-glycerate 3-kinase, chloroplastic-like [KO:K15918] [EC:2.7.1.31]
124692970  formate dehydrogenase 1, mitochondrial-like [KO:K00122] [EC:1.17.1.9]
124687101  formate dehydrogenase, mitochondrial [KO:K00122] [EC:1.17.1.9]
124701151  formyltetrahydrofolate deformylase 2, mitochondrial-like [KO:K01433] [EC:3.5.1.10]
124665927  formamidase-like isoform X1 [KO:K01455] [EC:3.5.1.49]
124671054  oxalate--CoA ligase-like [KO:K22133] [EC:6.2.1.8]
124675697  oxalate--CoA ligase-like [KO:K22133] [EC:6.2.1.8]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
lrd00010  Glycolysis / Gluconeogenesis
lrd00020  Citrate cycle (TCA cycle)
lrd00030  Pentose phosphate pathway
lrd00053  Ascorbate and aldarate metabolism
lrd00071  Fatty acid degradation
lrd00230  Purine metabolism
lrd00250  Alanine, aspartate and glutamate metabolism
lrd00260  Glycine, serine and threonine metabolism
lrd00620  Pyruvate metabolism
lrd00710  Carbon fixation by Calvin cycle
lrd00750  Vitamin B6 metabolism
lrd00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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