KEGG   PATHWAY: lsk00020
Entry
lsk00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Leptothermofonsia sichuanensis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
lsk00020  Citrate cycle (TCA cycle)
lsk00020

Module
lsk_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:lsk00020]
lsk_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:lsk00020]
lsk_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:lsk00020]
Other DBs
GO: 0006099
Organism
Leptothermofonsia sichuanensis [GN:lsk]
Gene
J5X98_13465  citrate synthase [KO:K01647] [EC:2.3.3.1]
J5X98_27405  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
J5X98_19710  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
J5X98_23485  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
J5X98_18380  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
J5X98_04805  CoA-binding protein [KO:K01902] [EC:6.2.1.5]
J5X98_04810  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
J5X98_18755  succinate dehydrogenase/fumarate reductase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
J5X98_03020  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
J5X98_05250  CoB--CoM heterodisulfide reductase iron-sulfur subunit B family protein [KO:K00241]
J5X98_24105  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
J5X98_10175  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
J5X98_11870  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
J5X98_08580  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
J5X98_09605  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
J5X98_25315  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
J5X98_13170  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
lsk00010  Glycolysis / Gluconeogenesis
lsk00053  Ascorbate and aldarate metabolism
lsk00061  Fatty acid biosynthesis
lsk00071  Fatty acid degradation
lsk00190  Oxidative phosphorylation
lsk00220  Arginine biosynthesis
lsk00250  Alanine, aspartate and glutamate metabolism
lsk00280  Valine, leucine and isoleucine degradation
lsk00350  Tyrosine metabolism
lsk00470  D-Amino acid metabolism
lsk00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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