KEGG   PATHWAY: lsua03430
Entry
lsua03430                   Pathway                                
Name
Mismatch repair - Levilactobacillus suantsaii
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
lsua03430  Mismatch repair
lsua03430

Other DBs
GO: 0006298
Organism
Levilactobacillus suantsaii [GN:lsua]
Gene
H3M12_10765  mutS; DNA mismatch repair protein MutS [KO:K03555]
H3M12_01815  hypothetical protein [KO:K03555]
H3M12_10685  endonuclease MutS2 [KO:K07456]
H3M12_06780  hypothetical protein [KO:K07456]
H3M12_10760  mutL; DNA mismatch repair endonuclease MutL [KO:K03572]
H3M12_11800  AAA family ATPase [KO:K03657] [EC:5.6.2.4]
H3M12_05355  AAA family ATPase [KO:K03657] [EC:5.6.2.4]
H3M12_07025  pcrA; DNA helicase PcrA [KO:K03657] [EC:5.6.2.4]
H3M12_09940  exodeoxyribonuclease VII large subunit [KO:K03601] [EC:3.1.11.6]
H3M12_09935  exodeoxyribonuclease VII small subunit [KO:K03602] [EC:3.1.11.6]
H3M12_08435  recJ; single-stranded-DNA-specific exonuclease RecJ [KO:K07462] [EC:3.1.-.-]
H3M12_12345  ssb; single-stranded DNA-binding protein [KO:K03111]
H3M12_02765  single-stranded DNA-binding protein [KO:K03111]
H3M12_03500  ssb; single-stranded DNA-binding protein [KO:K03111]
H3M12_08945  dnaE; DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
H3M12_08615  PolC-type DNA polymerase III [KO:K03763] [EC:2.7.7.7]
H3M12_03470  dnaN; DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
H3M12_06155  dnaX; DNA polymerase III subunit gamma/tau [KO:K02343] [EC:2.7.7.7]
H3M12_08330  holA; DNA polymerase III subunit delta [KO:K02340] [EC:2.7.7.7]
H3M12_06220  holB; DNA polymerase III subunit delta' [KO:K02341] [EC:2.7.7.7]
H3M12_06605  3'-5' exonuclease [KO:K02342] [EC:2.7.7.7]
H3M12_07030  ligA; NAD-dependent DNA ligase LigA [KO:K01972] [EC:6.5.1.2]
H3M12_01030  DNA adenine methylase [KO:K06223] [EC:2.1.1.72]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
KO pathway
ko03430   
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