KEGG   PATHWAY: lue03430
Entry
lue03430                    Pathway                                
Name
Mismatch repair - Lysobacter oculi
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
lue03430  Mismatch repair
lue03430

Other DBs
GO: 0006298
Organism
Lysobacter oculi [GN:lue]
Gene
DCD74_05800  mutS; DNA mismatch repair protein MutS [KO:K03555]
DCD74_10400  DNA helicase II [KO:K03657] [EC:5.6.2.4]
DCD74_03925  exodeoxyribonuclease I [KO:K01141] [EC:3.1.11.1]
DCD74_03045  exodeoxyribonuclease VII large subunit [KO:K03601] [EC:3.1.11.6]
DCD74_06420  exodeoxyribonuclease VII small subunit [KO:K03602] [EC:3.1.11.6]
DCD74_04110  recJ; single-stranded-DNA-specific exonuclease RecJ [KO:K07462] [EC:3.1.-.-]
DCD74_07505  single-stranded DNA-binding protein [KO:K03111]
DCD74_06405  DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
DCD74_10240  DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
DCD74_02810  DNA polymerase III subunit gamma/tau [KO:K02343] [EC:2.7.7.7]
DCD74_06495  DNA polymerase III subunit delta [KO:K02340] [EC:2.7.7.7]
DCD74_02905  DNA polymerase III subunit delta' [KO:K02341] [EC:2.7.7.7]
DCD74_02765  DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
DCD74_10605  3'-5' exonuclease [KO:K02342] [EC:2.7.7.7]
DCD74_08305  DNA polymerase III subunit chi [KO:K02339] [EC:2.7.7.7]
DCD74_03720  ligA; DNA ligase [KO:K01972] [EC:6.5.1.2]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
KO pathway
ko03430   
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