KEGG   PATHWAY: malb03008
Entry
malb03008                   Pathway                                
Name
Ribosome biogenesis in eukaryotes - Monopterus albus (swamp eel)
Description
Ribosomes are the cellular factories responsible for making proteins. In eukaryotes, ribosome biogenesis involves the production and correct assembly of four rRNAs and about 80 ribosomal proteins. It requires hundreds of factors not present in the mature particle. In the absence of these proteins, ribosome biogenesis is stalled and cell growth is terminated even under optimal growth conditions. The primary pre-rRNA transcript is assembled into the 90S pre-ribosome, which contains both 40S and 60S assembly factors. Within this complex, the pre-rRNA is cleaved. pre-60S ribosomes are subjected to several sequential processing steps in the nucleoplasm involving numerous assembly intermediates before it is exported to the cytoplasm and matured into the 60S ribosomal subunit. The pre-40S ribosome is matured to the small ribosomal subunit in the cytoplasm by cleavage.
Class
Genetic Information Processing; Translation
Pathway map
malb03008  Ribosome biogenesis in eukaryotes
malb03008

Organism
Monopterus albus (swamp eel) [GN:malb]
Gene
109958797  casein kinase II subunit beta-like [KO:K03115]
109971676  casein kinase II subunit beta [KO:K03115]
109962580  casein kinase II subunit alpha' isoform X1 [KO:K03097] [EC:2.7.11.1]
109960054  casein kinase II subunit alpha-like [KO:K03097] [EC:2.7.11.1]
109971572  casein kinase II subunit alpha'-like [KO:K03097] [EC:2.7.11.1]
109971710  casein kinase II subunit alpha [KO:K03097] [EC:2.7.11.1]
109956960  nol6; nucleolar protein 6 [KO:K14544]
109974634  rrp7a; ribosomal RNA-processing protein 7 homolog A [KO:K14545]
109951377  WD repeat-containing protein 43-like [KO:K14546]
109974393  utp4; LOW QUALITY PROTEIN: U3 small nucleolar RNA-associated protein 4 homolog [KO:K14548]
109956530  utp15; U3 small nucleolar RNA-associated protein 15 homolog [KO:K14549]
109953289  heatr1; HEAT repeat-containing protein 1 isoform X1 [KO:K14550]
109963755  wdr75; WD repeat-containing protein 75 [KO:K14552]
109973510  utp18; U3 small nucleolar RNA-associated protein 18 homolog [KO:K14553]
109973135  wdr36; WD repeat-containing protein 36 [KO:K14554]
109969530  tbl3; transducin beta-like protein 3 [KO:K14555]
109953485  wdr3; LOW QUALITY PROTEIN: WD repeat-containing protein 3 [KO:K14556]
109958370  utp6; U3 small nucleolar RNA-associated protein 6 homolog [KO:K14557]
109968763  periodic tryptophan protein 2 homolog [KO:K14558]
109963937  mphosph10; U3 small nucleolar ribonucleoprotein protein MPP10 [KO:K14559]
109951945  imp3; U3 small nucleolar ribonucleoprotein protein IMP3 [KO:K14560]
109959640  imp4; U3 small nucleolar ribonucleoprotein protein IMP4 [KO:K14561]
109972062  fbl; rRNA 2'-O-methyltransferase fibrillarin isoform X1 [KO:K14563] [EC:2.1.1.-]
109956166  nop56; LOW QUALITY PROTEIN: nucleolar protein 56 [KO:K14564]
109951527  nop58; nucleolar protein 58 [KO:K14565]
109969181  snu13; NHP2-like protein 1 [KO:K12845]
109972479  dkc1; H/ACA ribonucleoprotein complex subunit 4 isoform X1 [KO:K11131] [EC:5.4.99.-]
109974234  nhp2; H/ACA ribonucleoprotein complex subunit 2 isoform X1 [KO:K11129]
109964299  gar1; H/ACA ribonucleoprotein complex subunit 1 [KO:K11128]
109952024  nop10; H/ACA ribonucleoprotein complex subunit 3 [KO:K11130]
109967969  fcf1; rRNA-processing protein FCF1 homolog isoform X1 [KO:K14566]
109963758  U3 small nucleolar RNA-associated protein 14 homolog A-like [KO:K14567]
109962215  drosha; ribonuclease 3 [KO:K03685] [EC:3.1.26.3]
109966212  emg1; ribosomal RNA small subunit methyltransferase NEP1 [KO:K14568] [EC:2.1.1.260]
109966703  bms1; ribosome biogenesis protein BMS1 homolog [KO:K14569]
109974409  nat10; RNA cytidine acetyltransferase [KO:K14521] [EC:2.3.1.-]
109963434  rcl1; RNA 3'-terminal phosphate cyclase-like protein [KO:K11108]
109963844  pop1; ribonucleases P/MRP protein subunit POP1 [KO:K01164] [EC:3.1.26.5]
109964146  rpp38; ribonuclease P protein subunit p38 [KO:K14523] [EC:3.1.26.5]
109967868  pop4; ribonuclease P protein subunit p29 isoform X1 [KO:K03538] [EC:3.1.26.5]
109954889  pop5; ribonuclease P/MRP protein subunit POP5 [KO:K03537] [EC:3.1.26.5]
109955868  uncharacterized protein LOC109955868 [KO:K14525] [EC:3.1.26.5]
109972982  ribonuclease P protein subunit p25-like protein [KO:K14525] [EC:3.1.26.5]
109970111  LOW QUALITY PROTEIN: ribonuclease P protein subunit p25-like protein [KO:K14525] [EC:3.1.26.5]
109971926  pop7; ribonuclease P protein subunit p20 [KO:K14527] [EC:3.1.26.5]
109969677  rpp30; ribonuclease P protein subunit p30 isoform X1 [KO:K03539] [EC:3.1.26.5]
109965938  rpp40; ribonuclease P protein subunit p40 [KO:K14530] [EC:3.1.26.5]
109961697  rexo1; RNA exonuclease 1 homolog [KO:K14570] [EC:3.1.-.-]
109953040  uncharacterized protein LOC109953040 [KO:K14570] [EC:3.1.-.-]
109973299  putative RNA exonuclease NEF-sp [KO:K14570] [EC:3.1.-.-]
109972697  rexo2; oligoribonuclease, mitochondrial [KO:K13288] [EC:3.1.-.-]
109971310  xrn2; 5'-3' exoribonuclease 2 isoform X1 [KO:K12619] [EC:3.1.13.-]
109974933  gtpbp4; nucleolar GTP-binding protein 1 [KO:K06943]
109954726  gnl2; LOW QUALITY PROTEIN: nucleolar GTP-binding protein 2 [KO:K14537]
109956039  gnl3; guanine nucleotide-binding protein-like 3 [KO:K14538]
109956067  gnl3l; guanine nucleotide-binding protein-like 3-like protein [KO:K14538]
109964341  nvl; nuclear valosin-containing protein-like isoform X1 [KO:K14571]
109967377  mdn1; LOW QUALITY PROTEIN: midasin [KO:K14572]
109968182  rbm28; RNA-binding protein 28 [KO:K14573]
109961662  nob1; RNA-binding protein NOB1 isoform X1 [KO:K11883]
109953755  ran; GTP-binding nuclear protein Ran [KO:K07936]
109974811  exportin-1-like [KO:K14290]
109973586  exportin-1 [KO:K14290]
109968987  nmd3; 60S ribosomal export protein NMD3 [KO:K07562]
109955377  nxf1; nuclear RNA export factor 1 [KO:K14284]
109955175  NTF2-related export protein 2-like [KO:K14285]
109955254  NTF2-related export protein 2-like [KO:K14285]
109966898  eif6; eukaryotic translation initiation factor 6 isoform X1 [KO:K03264]
109963214  sbds; ribosome maturation protein SBDS [KO:K14574]
109974553  efl1; elongation factor-like GTPase 1 [KO:K14536] [EC:3.6.5.-]
109958307  lsg1; large subunit GTPase 1 homolog [KO:K14539] [EC:3.6.1.-]
109956728  spata5; spermatogenesis-associated protein 5 isoform X1 [KO:K14575]
109959705  ak6; adenylate kinase isoenzyme 6 [KO:K18532] [EC:2.7.4.3]
109965930  riok1; LOW QUALITY PROTEIN: serine/threonine-protein kinase RIO1 [KO:K07178] [EC:2.7.11.1]
109956862  riok2; serine/threonine-protein kinase RIO2 [KO:K07179] [EC:2.7.11.1]
Reference
  Authors
Freed EF, Bleichert F, Dutca LM, Baserga SJ
  Title
When ribosomes go bad: diseases of ribosome biogenesis.
  Journal
Mol Biosyst 6:481-93 (2010)
DOI:10.1039/b919670f
Reference
  Authors
Perez-Fernandez J, Roman A, De Las Rivas J, Bustelo XR, Dosil M
  Title
The 90S preribosome is a multimodular structure that is assembled through a hierarchical mechanism.
  Journal
Mol Cell Biol 27:5414-29 (2007)
DOI:10.1128/MCB.00380-07
Reference
  Authors
Strunk BS, Karbstein K
  Title
Powering through ribosome assembly.
  Journal
RNA 15:2083-104 (2009)
DOI:10.1261/rna.1792109
Reference
  Authors
Granneman S, Baserga SJ
  Title
Ribosome biogenesis: of knobs and RNA processing.
  Journal
Exp Cell Res 296:43-50 (2004)
DOI:10.1016/j.yexcr.2004.03.016
Reference
  Authors
Kressler D, Hurt E, Bassler J
  Title
Driving ribosome assembly.
  Journal
Biochim Biophys Acta 1803:673-83 (2010)
DOI:10.1016/j.bbamcr.2009.10.009
Related
pathway
malb03010  Ribosome
KO pathway
ko03008   
LinkDB

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