KEGG   PATHWAY: manq00020
Entry
manq00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Methanomicrobium antiquum
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
manq00020  Citrate cycle (TCA cycle)
manq00020

Module
manq_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:manq00020]
Other DBs
GO: 0006099
Organism
Methanomicrobium antiquum [GN:manq]
Gene
L1994_00190  NAD(P)/FAD-dependent oxidoreductase [KO:K00382] [EC:1.8.1.4]
L1994_02510  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
L1994_02515  thiamine pyrophosphate-dependent enzyme [KO:K00175] [EC:1.2.7.3 1.2.7.11]
L1994_02520  2-oxoacid:acceptor oxidoreductase family protein [KO:K00177] [EC:1.2.7.3]
L1994_02505  ferredoxin family protein [KO:K00176] [EC:1.2.7.3]
L1994_02530  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
L1994_02525  sucC; succinate-CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
L1994_02495  fumarate hydratase [KO:K01677] [EC:4.2.1.2]
L1994_02500  FumA C-terminus/TtdB family hydratase beta subunit [KO:K01678] [EC:4.2.1.2]
L1994_06665  lactate dehydrogenase [KO:K00024] [EC:1.1.1.37]
L1994_10190  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
L1994_04515  acetyl-CoA carboxylase biotin carboxylase subunit [KO:K01959] [EC:6.4.1.1]
L1994_04510  pyruvate/oxaloacetate carboxyltransferase [KO:K01960] [EC:6.4.1.1]
L1994_08590  porA; pyruvate ferredoxin oxidoreductase [KO:K00169] [EC:1.2.7.1]
L1994_00445  porA; pyruvate ferredoxin oxidoreductase [KO:K00169] [EC:1.2.7.1]
L1994_08595  thiamine pyrophosphate-dependent enzyme [KO:K00170] [EC:1.2.7.1]
L1994_00450  thiamine pyrophosphate-dependent enzyme [KO:K00170] [EC:1.2.7.1]
L1994_00435  pyruvate ferredoxin oxidoreductase subunit gamma [KO:K00172] [EC:1.2.7.1]
L1994_08585  2-oxoacid:acceptor oxidoreductase family protein [KO:K00172] [EC:1.2.7.1]
L1994_00440  4Fe-4S binding protein [KO:K00171] [EC:1.2.7.1]
L1994_08580  4Fe-4S binding protein [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
manq00010  Glycolysis / Gluconeogenesis
manq00061  Fatty acid biosynthesis
manq00071  Fatty acid degradation
manq00190  Oxidative phosphorylation
manq00220  Arginine biosynthesis
manq00250  Alanine, aspartate and glutamate metabolism
manq00280  Valine, leucine and isoleucine degradation
manq00350  Tyrosine metabolism
manq00470  D-Amino acid metabolism
manq00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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