KEGG   PATHWAY: mbg00020
Entry
mbg00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Methanoculleus bourgensis MS2
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mbg00020  Citrate cycle (TCA cycle)
mbg00020

Module
mbg_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mbg00020]
Other DBs
GO: 0006099
Organism
Methanoculleus bourgensis MS2 [GN:mbg]
Gene
BN140_0454  lpd; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
BN140_0235  2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
BN140_0895  korA; 2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
BN140_0234  2-oxoglutarate ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
BN140_0894  korB; 2-oxoglutarate ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
BN140_0893  korG; 2-oxoglutarate ferredoxin oxidoreductase subunit gamma [KO:K00177] [EC:1.2.7.3]
BN140_0896  korD; 2-oxoglutarate ferredoxin oxidoreductase subunit delta [KO:K00176] [EC:1.2.7.3]
BN140_0891  sucD; succinyl-CoA synthetase alpha subunit [KO:K01902] [EC:6.2.1.5]
BN140_0892  sucC; succinyl-CoA synthetase beta subunit [KO:K01903] [EC:6.2.1.5]
BN140_0898  fumA; fumarate hydratase subunit alpha [KO:K01677] [EC:4.2.1.2]
BN140_0897  fumB; fumarate hydratase subunit beta [KO:K01678] [EC:4.2.1.2]
BN140_0851  mdhA; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BN140_2565  ldh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BN140_1957  pycA; pyruvate carboxylase subunit A [KO:K01959] [EC:6.4.1.1]
BN140_1956  pycB; pyruvate carboxylase subunit B [KO:K01960] [EC:6.4.1.1]
BN140_0692  porA1; pyruvate ferredoxin oxidoreductase, alpha subunit [KO:K00169] [EC:1.2.7.1]
BN140_1333  porA3; pyruvate ferredoxin oxidoreductase, alpha subunit [KO:K00169] [EC:1.2.7.1]
BN140_0691  porB1; pyruvate ferredoxin oxidoreductase, beta subunit [KO:K00170] [EC:1.2.7.1]
BN140_1332  porB3; pyruvate ferredoxin oxidoreductase, beta subunit [KO:K00170] [EC:1.2.7.1]
BN140_0694  porG; pyruvate ferredoxin oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
BN140_1334  porC; pyruvate ferredoxin oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
BN140_1335  porD3; pyruvate ferredoxin oxidoreductase, delta subunit [KO:K00171] [EC:1.2.7.1]
BN140_0693  porD1; pyruvate ferredoxin oxidoreductase, delta subunit [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mbg00010  Glycolysis / Gluconeogenesis
mbg00061  Fatty acid biosynthesis
mbg00071  Fatty acid degradation
mbg00190  Oxidative phosphorylation
mbg00220  Arginine biosynthesis
mbg00250  Alanine, aspartate and glutamate metabolism
mbg00280  Valine, leucine and isoleucine degradation
mbg00350  Tyrosine metabolism
mbg00470  D-Amino acid metabolism
mbg00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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