KEGG   PATHWAY: mcf04710
Entry
mcf04710                    Pathway                                
Name
Circadian rhythm - Macaca fascicularis (crab-eating macaque)
Description
Circadian rhythm is an internal biological clock, which enables to sustain an approximately 24-hour rhythm in the absence of environmental cues. In mammals, the circadian clock mechanism consists of cell-autonomous transcription-translation feedback loops that drive rhythmic, 24-hour expression patterns of core clock components. The first negative feedback loop is a rhythmic transcription of period genes (PER1, PER2, and PER3) and chryptochrome genes (CRY1 and CRY2). PER and CRY proteins form a heterodimer, which acts on the CLOCK/BMAL1 heterodimer to repress its own transcription. PER and CRY proteins are phosphorylated by casein kinase epsilon (CKIepsilon), which leads to degradation and restarting of the cycle. The second loop is a positive feedback loop driven by the CLOCK/BMAL1 heterodimer, which initiates transcription of target genes containing E-box cis-regulatory enhancer sequences.
Class
Organismal Systems; Environmental adaptation
Pathway map
mcf04710  Circadian rhythm
mcf04710

Other DBs
GO: 0007623
Organism
Macaca fascicularis (crab-eating macaque) [GN:mcf]
Gene
102142259  RORA; nuclear receptor ROR-alpha isoform X3 [KO:K08532]
102146956  RORB; nuclear receptor ROR-beta isoform X2 [KO:K08533]
102145834  RORC; nuclear receptor ROR-gamma isoform X4 [KO:K08534]
101925629  NR1D1; nuclear receptor subfamily 1 group D member 1 [KO:K03728]
102134000  NR1D2; nuclear receptor subfamily 1 group D member 2 isoform X1 [KO:K08531]
101865448  ARNTL; aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X3 [KO:K02296]
101926570  D site-binding protein isoform X1 [KO:K09056]
102121584  BHLHE40; class E basic helix-loop-helix protein 40 [KO:K03729]
102145769  BHLHE41; class E basic helix-loop-helix protein 41 [KO:K03730]
101926774  CSNK1D; casein kinase I isoform X1 [KO:K08959] [EC:2.7.11.1]
102144252  casein kinase I isoform X1 [KO:K08960] [EC:2.7.11.1]
101865021  PER1; period circadian protein homolog 1 isoform X2 [KO:K21944]
102141183  PER2; period circadian protein homolog 2 [KO:K02633]
102130020  PER3; period circadian protein homolog 3 isoform X1 [KO:K21945]
102129439  CRY1; cryptochrome-1 [KO:K02295]
102117999  CRY2; cryptochrome-2 [KO:K02295]
102131896  CLOCK; circadian locomoter output cycles protein kaput isoform X1 [KO:K02223] [EC:2.3.1.48]
101925711  NPAS2; neuronal PAS domain-containing protein 2 isoform X2 [KO:K09026]
102141699  CREB1; cyclic AMP-responsive element-binding protein 1 isoform X2 [KO:K05870]
102143726  PRKAA2; 5'-AMP-activated protein kinase catalytic subunit alpha-2 isoform X1 [KO:K07198] [EC:2.7.11.31]
102144683  PRKAA1; 5'-AMP-activated protein kinase catalytic subunit alpha-1 isoform X1 [KO:K07198] [EC:2.7.11.31]
101925338  PRKAB2; 5'-AMP-activated protein kinase subunit beta-2 isoform X1 [KO:K07199]
102133927  PRKAB1; 5'-AMP-activated protein kinase subunit beta-1 isoform X1 [KO:K07199]
102128414  PRKAG2; 5'-AMP-activated protein kinase subunit gamma-2 isoform X1 [KO:K07200]
102130217  PRKAG3; 5'-AMP-activated protein kinase subunit gamma-3 isoform X3 [KO:K07200]
101865279  PRKAG1; 5'-AMP-activated protein kinase subunit gamma-1 isoform X1 [KO:K07200]
102132483  RBX1; E3 ubiquitin-protein ligase RBX1 isoform X1 [KO:K03868] [EC:2.3.2.32]
101867010  CUL1; cullin-1 [KO:K03347]
102142637  SKP1; S-phase kinase-associated protein 1 [KO:K03094]
123569073  S-phase kinase-associated protein 1-like [KO:K03094]
102119803  S-phase kinase-associated protein 1-like isoform X1 [KO:K03094]
102143687  FBXW11; F-box/WD repeat-containing protein 11 isoform X1 [KO:K03362]
102136827  BTRC; F-box/WD repeat-containing protein 1A isoform X3 [KO:K03362]
102135460  putative F-box/LRR-repeat protein 21 [KO:K10287]
102125683  FBXL3; F-box/LRR-repeat protein 3 [KO:K10269]
Compound
C00076  Calcium cation
C00575  3',5'-Cyclic AMP
Reference
  Authors
Takahashi JS
  Title
Transcriptional architecture of the mammalian circadian clock.
  Journal
Nat Rev Genet 18:164-179 (2017)
DOI:10.1038/nrg.2016.150
Reference
  Authors
Wang S, Li F, Lin Y, Wu B
  Title
Targeting REV-ERBalpha for therapeutic purposes: promises and challenges.
  Journal
Theranostics 10:4168-4182 (2020)
DOI:10.7150/thno.43834
Reference
  Authors
Panda S, Hogenesch JB, Kay SA.
  Title
Circadian rhythms from flies to human.
  Journal
Nature 417:329-35 (2002)
DOI:10.1038/417329a
Reference
  Authors
Honma S, Kawamoto T, Takagi Y, Fujimoto K, Sato F, Noshiro M, Kato Y, Honma K.
  Title
Dec1 and Dec2 are regulators of the mammalian molecular clock.
  Journal
Nature 419:841-4 (2002)
DOI:10.1038/nature01123
Reference
  Authors
Fu L, Lee CC.
  Title
The circadian clock: pacemaker and tumour suppressor.
  Journal
Nat Rev Cancer 3:350-61 (2003)
DOI:10.1038/nrc1072
Reference
  Authors
Schibler U, Sassone-Corsi P.
  Title
A web of circadian pacemakers.
  Journal
Cell 111:919-22 (2002)
DOI:10.1016/S0092-8674(02)01225-4
Reference
  Authors
Takahashi JS, Hong HK, Ko CH, McDearmon EL
  Title
The genetics of mammalian circadian order and disorder: implications for physiology and disease.
  Journal
Nat Rev Genet 9:764-75 (2008)
DOI:10.1038/nrg2430
Related
pathway
mcf04010  MAPK signaling pathway
mcf04120  Ubiquitin mediated proteolysis
mcf04713  Circadian entrainment
KO pathway
ko04710   
LinkDB

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