KEGG   PATHWAY: mdl03008
Entry
mdl03008                    Pathway                                
Name
Ribosome biogenesis in eukaryotes - Microplitis demolitor
Description
Ribosomes are the cellular factories responsible for making proteins. In eukaryotes, ribosome biogenesis involves the production and correct assembly of four rRNAs and about 80 ribosomal proteins. It requires hundreds of factors not present in the mature particle. In the absence of these proteins, ribosome biogenesis is stalled and cell growth is terminated even under optimal growth conditions. The primary pre-rRNA transcript is assembled into the 90S pre-ribosome, which contains both 40S and 60S assembly factors. Within this complex, the pre-rRNA is cleaved. pre-60S ribosomes are subjected to several sequential processing steps in the nucleoplasm involving numerous assembly intermediates before it is exported to the cytoplasm and matured into the 60S ribosomal subunit. The pre-40S ribosome is matured to the small ribosomal subunit in the cytoplasm by cleavage.
Class
Genetic Information Processing; Translation
Pathway map
mdl03008  Ribosome biogenesis in eukaryotes
mdl03008

Organism
Microplitis demolitor [GN:mdl]
Gene
103580509  casein kinase II subunit beta isoform X1 [KO:K03115]
103568907  casein kinase II subunit alpha isoform X1 [KO:K03097] [EC:2.7.11.1]
103576169  nucleolar protein 6 [KO:K14544]
103580976  ribosomal RNA-processing protein 7 homolog A [KO:K14545]
103576530  WD repeat-containing protein 43 isoform X1 [KO:K14546]
103578119  cirhin [KO:K14548]
103575015  U3 small nucleolar RNA-associated protein 15 homolog [KO:K14549]
103577138  HEAT repeat-containing protein 1 [KO:K14550]
103579614  WD repeat-containing protein 75 [KO:K14552]
103578919  U3 small nucleolar RNA-associated protein 18 homolog [KO:K14553]
103579246  WD repeat-containing protein 36 [KO:K14554]
103568927  transducin beta-like protein 3 [KO:K14555]
103573298  WD repeat-containing protein 3 [KO:K14556]
103579361  U3 small nucleolar RNA-associated protein 6 homolog [KO:K14557]
103579402  U3 small nucleolar RNA-associated protein 6 homolog [KO:K14557]
103571301  periodic tryptophan protein 2 homolog [KO:K14558]
103573676  U3 small nucleolar ribonucleoprotein protein MPP10 [KO:K14559]
103573806  U3 small nucleolar ribonucleoprotein protein IMP3 [KO:K14560]
103571264  U3 small nucleolar ribonucleoprotein protein IMP4 [KO:K14561]
103576592  rRNA 2'-O-methyltransferase fibrillarin isoform X1 [KO:K14563] [EC:2.1.1.-]
103577272  nucleolar protein 56 [KO:K14564]
106694307  nucleolar protein 58-like [KO:K14565]
103577640  nucleolar protein 58 [KO:K14565]
103569123  NHP2-like protein 1 homolog [KO:K12845]
103571146  H/ACA ribonucleoprotein complex subunit 4 [KO:K11131] [EC:5.4.99.-]
103569962  H/ACA ribonucleoprotein complex subunit 2-like protein [KO:K11129]
103572693  probable H/ACA ribonucleoprotein complex subunit 1 [KO:K11128]
106693144  H/ACA ribonucleoprotein complex subunit 3 [KO:K11130]
103572769  rRNA-processing protein FCF1 homolog [KO:K14566]
103568625  U3 small nucleolar RNA-associated protein 14 homolog A [KO:K14567]
103571094  ribonuclease 3 [KO:K03685] [EC:3.1.26.3]
103574456  ribosomal RNA small subunit methyltransferase NEP1-like [KO:K14568] [EC:2.1.1.260]
103574474  ribosomal RNA small subunit methyltransferase NEP1 [KO:K14568] [EC:2.1.1.260]
103569202  ribosome biogenesis protein BMS1 homolog [KO:K14569]
103580303  N-acetyltransferase 10 isoform X1 [KO:K14521] [EC:2.3.1.-]
103576483  RNA 3'-terminal phosphate cyclase-like protein [KO:K11108]
103576760  ribonucleases P/MRP protein subunit POP1 [KO:K01164] [EC:3.1.26.5]
103575487  ribonuclease P protein subunit p38 [KO:K14523] [EC:3.1.26.5]
103570473  ribonuclease P protein subunit p29 [KO:K03538] [EC:3.1.26.5]
103572168  ribonuclease P/MRP protein subunit POP5 [KO:K03537] [EC:3.1.26.5]
103572147  ribonuclease P protein subunit p25-like protein [KO:K14525] [EC:3.1.26.5]
103578559  ribonuclease P protein subunit p20 isoform X1 [KO:K14527] [EC:3.1.26.5]
103571557  ribonuclease P protein subunit p40 [KO:K14530] [EC:3.1.26.5]
103568963  RNA exonuclease 1 homolog isoform X1 [KO:K14570] [EC:3.1.-.-]
103579032  uncharacterized protein LOC103579032 isoform X1 [KO:K14570] [EC:3.1.-.-]
103579657  putative RNA exonuclease NEF-sp [KO:K14570] [EC:3.1.-.-]
103571248  5'-3' exoribonuclease 1 isoform X1 [KO:K12618] [EC:3.1.13.-]
103578704  5'-3' exoribonuclease 2 homolog [KO:K12619] [EC:3.1.13.-]
103575768  nucleolar GTP-binding protein 1 [KO:K06943]
103569905  nucleolar GTP-binding protein 2 [KO:K14537]
103568401  guanine nucleotide-binding protein-like 3 homolog [KO:K14538]
103571601  nuclear valosin-containing protein-like isoform X1 [KO:K14571]
103575520  midasin [KO:K14572]
103570568  RNA-binding protein 28 [KO:K14573]
103570148  RNA-binding protein NOB1 [KO:K11883]
103569822  GTP-binding nuclear protein Ran [KO:K07936]
103577013  exportin-1 [KO:K14290]
103577792  60S ribosomal export protein NMD3 [KO:K07562]
103571260  nuclear RNA export factor 2-like [KO:K14284]
103575383  nuclear RNA export factor 1-like [KO:K14284]
103578737  nuclear RNA export factor 1 [KO:K14284]
103578738  nuclear RNA export factor 1-like isoform X1 [KO:K14284]
103575382  nuclear RNA export factor 1 [KO:K14284]
103580126  nuclear RNA export factor 2 [KO:K14284]
103578896  NTF2-related export protein [KO:K14285]
103574129  eukaryotic translation initiation factor 6 [KO:K03264]
103568459  ribosome maturation protein SBDS [KO:K14574]
103577096  elongation factor Tu GTP-binding domain-containing protein 1 [KO:K14536] [EC:3.6.5.-]
103577918  large subunit GTPase 1 homolog [KO:K14539] [EC:3.6.1.-]
103569679  spermatogenesis-associated protein 5 [KO:K14575]
103580738  adenylate kinase isoenzyme 6 [KO:K18532] [EC:2.7.4.3]
103573937  serine/threonine-protein kinase RIO1 [KO:K07178] [EC:2.7.11.1]
103577195  serine/threonine-protein kinase RIO2 [KO:K07179] [EC:2.7.11.1]
Reference
  Authors
Freed EF, Bleichert F, Dutca LM, Baserga SJ
  Title
When ribosomes go bad: diseases of ribosome biogenesis.
  Journal
Mol Biosyst 6:481-93 (2010)
DOI:10.1039/b919670f
Reference
  Authors
Perez-Fernandez J, Roman A, De Las Rivas J, Bustelo XR, Dosil M
  Title
The 90S preribosome is a multimodular structure that is assembled through a hierarchical mechanism.
  Journal
Mol Cell Biol 27:5414-29 (2007)
DOI:10.1128/MCB.00380-07
Reference
  Authors
Strunk BS, Karbstein K
  Title
Powering through ribosome assembly.
  Journal
RNA 15:2083-104 (2009)
DOI:10.1261/rna.1792109
Reference
  Authors
Granneman S, Baserga SJ
  Title
Ribosome biogenesis: of knobs and RNA processing.
  Journal
Exp Cell Res 296:43-50 (2004)
DOI:10.1016/j.yexcr.2004.03.016
Reference
  Authors
Kressler D, Hurt E, Bassler J
  Title
Driving ribosome assembly.
  Journal
Biochim Biophys Acta 1803:673-83 (2010)
DOI:10.1016/j.bbamcr.2009.10.009
Related
pathway
mdl03010  Ribosome
KO pathway
ko03008   
LinkDB

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