KEGG   PATHWAY: mdm00630
Entry
mdm00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Malus domestica (apple)
Class
Metabolism; Carbohydrate metabolism
Pathway map
mdm00630  Glyoxylate and dicarboxylate metabolism
mdm00630

Module
mdm_M00012  Glyoxylate cycle [PATH:mdm00630]
mdm_M00532  Photorespiration [PATH:mdm00630]
mdm_M00621  Glycine cleavage system [PATH:mdm00630]
Other DBs
GO: 0046487 0043648
Organism
Malus domestica (apple) [GN:mdm]
Gene
103404799  isocitrate lyase-like [KO:K01637] [EC:4.1.3.1 4.1.3.30]
103442594  LOW QUALITY PROTEIN: isocitrate lyase [KO:K01637] [EC:4.1.3.1 4.1.3.30]
103442064  acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal [KO:K01895] [EC:6.2.1.1]
103416930  acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal-like isoform X1 [KO:K01895] [EC:6.2.1.1]
103403560  LOW QUALITY PROTEIN: acetate/butyrate--CoA ligase AAE7, peroxisomal [KO:K01913] [EC:6.2.1.1 6.2.1.2]
103423955  acetate/butyrate--CoA ligase AAE7, peroxisomal-like [KO:K01913] [EC:6.2.1.1 6.2.1.2]
103437564  malate synthase, glyoxysomal [KO:K01638] [EC:2.3.3.9]
103453451  malate dehydrogenase [KO:K00025] [EC:1.1.1.37]
103405182  malate dehydrogenase-like [KO:K00025] [EC:1.1.1.37]
103435358  malate dehydrogenase-like isoform X1 [KO:K00025] [EC:1.1.1.37]
114827711  malate dehydrogenase-like isoform X1 [KO:K00025] [EC:1.1.1.37]
103455965  malate dehydrogenase, glyoxysomal-like [KO:K00026] [EC:1.1.1.37]
103437822  malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
103436249  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
103405405  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
103431524  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
103424543  malate dehydrogenase, chloroplastic-like [KO:K00026] [EC:1.1.1.37]
103448751  LOW QUALITY PROTEIN: malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
103413538  citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
103438350  citrate synthase, mitochondrial-like isoform X1 [KO:K01647] [EC:2.3.3.1]
103443220  citrate synthase, glyoxysomal [KO:K01647] [EC:2.3.3.1]
103417230  citrate synthase, glyoxysomal [KO:K01647] [EC:2.3.3.1]
103401041  LOW QUALITY PROTEIN: aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
103455909  aconitate hydratase 1-like [KO:K01681] [EC:4.2.1.3]
103404815  aconitate hydratase, cytoplasmic-like [KO:K01681] [EC:4.2.1.3]
103442605  aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
103446821  acetyl-CoA acetyltransferase, cytosolic 1 isoform X1 [KO:K00626] [EC:2.3.1.9]
103429192  acetyl-CoA acetyltransferase, cytosolic 1 [KO:K00626] [EC:2.3.1.9]
103445750  peroxisomal (S)-2-hydroxy-acid oxidase-like [KO:K11517] [EC:1.1.3.15]
103435003  (S)-2-hydroxy-acid oxidase GLO1-like [KO:K11517] [EC:1.1.3.15]
103435155  (S)-2-hydroxy-acid oxidase GLO1-like isoform X1 [KO:K11517] [EC:1.1.3.15]
103435655  peroxisomal (S)-2-hydroxy-acid oxidase isoform X1 [KO:K11517] [EC:1.1.3.15]
103443663  peroxisomal (S)-2-hydroxy-acid oxidase GLO4-like [KO:K11517] [EC:1.1.3.15]
103426032  peroxisomal (S)-2-hydroxy-acid oxidase GLO4-like isoform X1 [KO:K11517] [EC:1.1.3.15]
103445262  catalase isozyme 1-like [KO:K03781] [EC:1.11.1.6]
103436733  catalase isozyme 1 [KO:K03781] [EC:1.11.1.6]
103412104  LOW QUALITY PROTEIN: catalase isozyme 1 [KO:K03781] [EC:1.11.1.6]
103439114  glyoxylate/hydroxypyruvate reductase HPR3-like [KO:K15919] [EC:1.1.1.79 1.1.1.81]
103439098  glyoxylate/hydroxypyruvate reductase HPR3-like [KO:K15919] [EC:1.1.1.79 1.1.1.81]
103453571  glyoxylate/succinic semialdehyde reductase 2, chloroplastic [KO:K18121] [EC:1.1.1.79 1.1.1.-]
103453867  glyoxylate/succinic semialdehyde reductase 1 [KO:K18121] [EC:1.1.1.79 1.1.1.-]
103420047  glycerate dehydrogenase [KO:K15893] [EC:1.1.1.29]
103446827  phosphoglycolate phosphatase 2 [KO:K19269] [EC:3.1.3.18 3.1.3.48]
103451169  LOW QUALITY PROTEIN: phosphoglycolate phosphatase 1B, chloroplastic-like [KO:K19269] [EC:3.1.3.18 3.1.3.48]
114824453  phosphoglycolate phosphatase 1B, chloroplastic-like [KO:K19269] [EC:3.1.3.18 3.1.3.48]
108171420  LOW QUALITY PROTEIN: uncharacterized protein LOC108171420 [KO:K01601] [EC:4.1.1.39]
103432255  ribulose bisphosphate carboxylase small chain, chloroplastic [KO:K01602] [EC:4.1.1.39]
103444126  ribulose bisphosphate carboxylase small chain, chloroplastic [KO:K01602] [EC:4.1.1.39]
103416457  ribulose bisphosphate carboxylase small chain, chloroplastic-like isoform X1 [KO:K01602] [EC:4.1.1.39]
103453824  ribulose bisphosphate carboxylase small chain clone 512-like [KO:K01602] [EC:4.1.1.39]
103423201  serine--glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
103427269  serine--glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
103452041  glutamate--glyoxylate aminotransferase 2-like [KO:K14272] [EC:2.6.1.4 2.6.1.2 2.6.1.44]
103403075  glutamate--glyoxylate aminotransferase 2 isoform X1 [KO:K14272] [EC:2.6.1.4 2.6.1.2 2.6.1.44]
114820893  LOW QUALITY PROTEIN: ferredoxin-dependent glutamate synthase, chloroplastic [KO:K00284] [EC:1.4.7.1]
103403399  glutamine synthetase PR-2 [KO:K01915] [EC:6.3.1.2]
103417448  glutamine synthetase cytosolic isozyme [KO:K01915] [EC:6.3.1.2]
103425668  glutamine synthetase leaf isozyme, chloroplastic [KO:K01915] [EC:6.3.1.2]
103421902  glutamine synthetase cytosolic isozyme [KO:K01915] [EC:6.3.1.2]
103453050  glutamine synthetase leaf isozyme, chloroplastic [KO:K01915] [EC:6.3.1.2]
103414194  glutamine synthetase nodule isozyme-like [KO:K01915] [EC:6.3.1.2]
114821104  glutamine synthetase nodule isozyme-like [KO:K01915] [EC:6.3.1.2]
103446887  serine hydroxymethyltransferase, mitochondrial [KO:K00600] [EC:2.1.2.1]
103450286  serine hydroxymethyltransferase 7-like [KO:K00600] [EC:2.1.2.1]
103402023  serine hydroxymethyltransferase, mitochondrial [KO:K00600] [EC:2.1.2.1]
103405877  serine hydroxymethyltransferase 3, chloroplastic-like isoform X1 [KO:K00600] [EC:2.1.2.1]
103431625  LOW QUALITY PROTEIN: serine hydroxymethyltransferase, mitochondrial [KO:K00600] [EC:2.1.2.1]
103431685  serine hydroxymethyltransferase 7 [KO:K00600] [EC:2.1.2.1]
103441614  LOW QUALITY PROTEIN: serine hydroxymethyltransferase 7 [KO:K00600] [EC:2.1.2.1]
103441699  serine hydroxymethyltransferase, mitochondrial [KO:K00600] [EC:2.1.2.1]
103443414  serine hydroxymethyltransferase 4 [KO:K00600] [EC:2.1.2.1]
103444223  serine hydroxymethyltransferase 3, chloroplastic-like [KO:K00600] [EC:2.1.2.1]
103429430  serine hydroxymethyltransferase 3, chloroplastic-like [KO:K00600] [EC:2.1.2.1]
103427588  serine hydroxymethyltransferase 7-like [KO:K00600] [EC:2.1.2.1]
103455829  glycine dehydrogenase (decarboxylating), mitochondrial [KO:K00281] [EC:1.4.4.2]
103440758  glycine dehydrogenase (decarboxylating), mitochondrial-like [KO:K00281] [EC:1.4.4.2]
103446734  aminomethyltransferase, mitochondrial [KO:K00605] [EC:2.1.2.10]
103419610  aminomethyltransferase, mitochondrial [KO:K00605] [EC:2.1.2.10]
103403556  LOW QUALITY PROTEIN: dihydrolipoyl dehydrogenase 2, chloroplastic [KO:K00382] [EC:1.8.1.4]
103432166  dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
103423928  dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
103403988  glycine cleavage system H protein 3, mitochondrial-like [KO:K02437]
103409056  glycine cleavage system H protein 2, mitochondrial-like [KO:K02437]
103402356  uncharacterized protein LOC103402356 [KO:K02437]
103409716  glycine cleavage system H protein 3, mitochondrial [KO:K02437]
114827726  glycine cleavage system H protein 2, mitochondrial-like [KO:K02437]
103440671  D-glycerate 3-kinase, chloroplastic isoform X1 [KO:K15918] [EC:2.7.1.31]
103404344  formate dehydrogenase, mitochondrial [KO:K00122] [EC:1.17.1.9]
103429023  formate dehydrogenase, mitochondrial [KO:K00122] [EC:1.17.1.9]
103437095  formyltetrahydrofolate deformylase 1, mitochondrial-like isoform X1 [KO:K01433] [EC:3.5.1.10]
103431619  uncharacterized protein LOC103431619 isoform X1 [KO:K01455] [EC:3.5.1.49]
103424403  oxalate--CoA ligase-like [KO:K22133] [EC:6.2.1.8]
103429050  oxalate--CoA ligase-like [KO:K22133] [EC:6.2.1.8]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
mdm00010  Glycolysis / Gluconeogenesis
mdm00020  Citrate cycle (TCA cycle)
mdm00030  Pentose phosphate pathway
mdm00053  Ascorbate and aldarate metabolism
mdm00071  Fatty acid degradation
mdm00230  Purine metabolism
mdm00250  Alanine, aspartate and glutamate metabolism
mdm00260  Glycine, serine and threonine metabolism
mdm00620  Pyruvate metabolism
mdm00710  Carbon fixation by Calvin cycle
mdm00750  Vitamin B6 metabolism
mdm00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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