KEGG   PATHWAY: mec03430
Entry
mec03430                    Pathway                                
Name
Mismatch repair - Methylophaga frappieri
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
mec03430  Mismatch repair
mec03430

Other DBs
GO: 0006298
Organism
Methylophaga frappieri [GN:mec]
Gene
Q7C_218  DNA mismatch repair protein MutS [KO:K03555]
Q7C_1669  DNA mismatch repair protein MutL [KO:K03572]
Q7C_1687  DNA mismatch repair endonuclease MutH [KO:K03573]
Q7C_1242  ATP-dependent DNA helicase UvrD/PcrA [KO:K03657] [EC:5.6.2.4]
Q7C_1394  Exodeoxyribonuclease I [KO:K01141] [EC:3.1.11.1]
Q7C_1509  Exodeoxyribonuclease VII large subunit [KO:K03601] [EC:3.1.11.6]
Q7C_676  Exodeoxyribonuclease VII small subunit [KO:K03602] [EC:3.1.11.6]
Q7C_2641  Single-stranded-DNA-specific exonuclease RecJ [KO:K07462] [EC:3.1.-.-]
Q7C_518  Single-stranded DNA-binding protein [KO:K03111]
Q7C_2184  Single-stranded DNA-binding protein [KO:K03111]
Q7C_2706  Single-stranded DNA-binding protein [KO:K03111]
Q7C_295  DNA polymerase III alpha subunit [KO:K02337] [EC:2.7.7.7]
Q7C_1854  DNA polymerase III beta subunit [KO:K02338] [EC:2.7.7.7]
Q7C_623  DNA polymerase III subunits gamma and tau [KO:K02343] [EC:2.7.7.7]
Q7C_597  DNA polymerase III delta subunit [KO:K02340] [EC:2.7.7.7]
Q7C_2688  DNA polymerase III delta prime subunit [KO:K02341] [EC:2.7.7.7]
Q7C_1535  DNA polymerase III epsilon subunit [KO:K02342] [EC:2.7.7.7]
Q7C_553  DNA polymerase III, epsilon subunit-like protein [KO:K02342] [EC:2.7.7.7]
Q7C_1659  DNA polymerase III epsilon subunit [KO:K02342] [EC:2.7.7.7]
Q7C_2140  DNA polymerase III epsilon subunit [KO:K02342] [EC:2.7.7.7]
Q7C_2736  DNA polymerase III, epsilon subunit-related 3'-5' exonuclease [KO:K02342] [EC:2.7.7.7]
Q7C_2500  DNA polymerase III chi subunit [KO:K02339] [EC:2.7.7.7]
Q7C_41  DNA ligase [KO:K01972] [EC:6.5.1.2]
Q7C_116  Methyl-directed repair DNA adenine methylase [KO:K06223] [EC:2.1.1.72]
Q7C_844  Methyl-directed repair DNA adenine methylase [KO:K06223] [EC:2.1.1.72]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
KO pathway
ko03430   
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