KEGG   PATHWAY: mem00020
Entry
mem00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Methanoculleus marisnigri
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mem00020  Citrate cycle (TCA cycle)
mem00020

Module
mem_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mem00020]
Other DBs
GO: 0006099
Organism
Methanoculleus marisnigri [GN:mem]
Gene
Memar_0490  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Memar_2031  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Memar_0844  2-oxoglutarate ferredoxin oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Memar_0843  2-oxoglutarate ferredoxin oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Memar_2032  pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Memar_0842  2-oxoglutarate ferredoxin oxidoreductase, gamma subunit [KO:K00177] [EC:1.2.7.3]
Memar_0845  2-oxoglutarate ferredoxin oxidoreductase, delta subunit [KO:K00176] [EC:1.2.7.3]
Memar_0840  succinyl-CoA synthetase (ADP-forming) alpha subunit [KO:K01902] [EC:6.2.1.5]
Memar_0841  succinyl-CoA synthetase (ADP-forming) beta subunit [KO:K01903] [EC:6.2.1.5]
Memar_0847  fumarase alpha subunit [KO:K01677] [EC:4.2.1.2]
Memar_0846  fumarase beta subunit [KO:K01678] [EC:4.2.1.2]
Memar_2444  malate dehydrogenase (NADP) / malate dehydrogenase (NAD) [KO:K00024] [EC:1.1.1.37]
Memar_0797  malate dehydrogenase (NAD) [KO:K00024] [EC:1.1.1.37]
Memar_1642  pyruvate carboxylase subunit A [KO:K01959] [EC:6.4.1.1]
Memar_1643  pyruvate carboxylase subunit B [KO:K01960] [EC:6.4.1.1]
Memar_0709  pyruvate ferredoxin oxidoreductase, alpha subunit [KO:K00169] [EC:1.2.7.1]
Memar_2319  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00169] [EC:1.2.7.1]
Memar_0710  pyruvate ferredoxin oxidoreductase, beta subunit [KO:K00170] [EC:1.2.7.1]
Memar_2318  thiamine pyrophosphate enzyme domain protein TPP-binding protein [KO:K00170] [EC:1.2.7.1]
Memar_0707  pyruvate ferredoxin oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
Memar_2320  pyruvate/ketoisovalerate oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
Memar_2321  pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [KO:K00171] [EC:1.2.7.1]
Memar_0708  pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mem00010  Glycolysis / Gluconeogenesis
mem00061  Fatty acid biosynthesis
mem00071  Fatty acid degradation
mem00190  Oxidative phosphorylation
mem00220  Arginine biosynthesis
mem00250  Alanine, aspartate and glutamate metabolism
mem00280  Valine, leucine and isoleucine degradation
mem00350  Tyrosine metabolism
mem00470  D-Amino acid metabolism
mem00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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