KEGG   PATHWAY: mesb00020
Entry
mesb00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Methanogenium sp. S4BF
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mesb00020  Citrate cycle (TCA cycle)
mesb00020

Module
mesb_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mesb00020]
Other DBs
GO: 0006099
Organism
Methanogenium sp. S4BF [GN:mesb]
Gene
L1S32_08130  NAD(P)/FAD-dependent oxidoreductase [KO:K00382] [EC:1.8.1.4]
L1S32_01280  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
L1S32_06485  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
L1S32_01285  thiamine pyrophosphate-dependent enzyme [KO:K00175] [EC:1.2.7.3 1.2.7.11]
L1S32_06490  thiamine pyrophosphate-dependent enzyme [KO:K00175] [EC:1.2.7.3 1.2.7.11]
L1S32_06495  2-oxoacid:ferredoxin oxidoreductase subunit gamma [KO:K00177] [EC:1.2.7.3]
L1S32_06480  ferredoxin family protein [KO:K00176] [EC:1.2.7.3]
L1S32_06505  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
L1S32_06500  succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
L1S32_06470  fumarate hydratase [KO:K01677] [EC:4.2.1.2]
L1S32_06475  FumA C-terminus/TtdB family hydratase beta subunit [KO:K01678] [EC:4.2.1.2]
L1S32_00645  lactate dehydrogenase [KO:K00024] [EC:1.1.1.37]
L1S32_10305  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
L1S32_01655  acetyl-CoA carboxylase biotin carboxylase subunit [KO:K01959] [EC:6.4.1.1]
L1S32_01660  pyruvate/oxaloacetate carboxyltransferase [KO:K01960] [EC:6.4.1.1]
L1S32_00375  porA; pyruvate ferredoxin oxidoreductase [KO:K00169] [EC:1.2.7.1]
L1S32_11360  porA; pyruvate ferredoxin oxidoreductase [KO:K00169] [EC:1.2.7.1]
L1S32_00370  thiamine pyrophosphate-dependent enzyme [KO:K00170] [EC:1.2.7.1]
L1S32_11365  thiamine pyrophosphate-dependent enzyme [KO:K00170] [EC:1.2.7.1]
L1S32_00385  pyruvate ferredoxin oxidoreductase subunit gamma [KO:K00172] [EC:1.2.7.1]
L1S32_11355  2-oxoacid:acceptor oxidoreductase family protein [KO:K00172] [EC:1.2.7.1]
L1S32_00380  4Fe-4S binding protein [KO:K00171] [EC:1.2.7.1]
L1S32_11350  4Fe-4S binding protein [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mesb00010  Glycolysis / Gluconeogenesis
mesb00061  Fatty acid biosynthesis
mesb00071  Fatty acid degradation
mesb00190  Oxidative phosphorylation
mesb00220  Arginine biosynthesis
mesb00250  Alanine, aspartate and glutamate metabolism
mesb00280  Valine, leucine and isoleucine degradation
mesb00350  Tyrosine metabolism
mesb00470  D-Amino acid metabolism
mesb00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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