KEGG   PATHWAY: metc00020
Entry
metc00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Methanothermobacter sp. CaT2
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
metc00020  Citrate cycle (TCA cycle)
metc00020

Module
metc_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:metc00020]
Other DBs
GO: 0006099
Organism
Methanothermobacter sp. CaT2 [GN:metc]
Gene
MTCT_1504  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
MTCT_0461  2-oxoacid:ferredoxin oxidoreductase alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
MTCT_0941  2-oxoglutarate ferredoxin oxidoreductase alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
MTCT_0462  2-oxoacid ferredoxin oxidoreductase beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
MTCT_0942  2-oxoglutarate ferredoxin oxidoreductase beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
MTCT_0943  2-oxoglutarate ferredoxin oxidoreductase gamma subunit [KO:K00177] [EC:1.2.7.3]
MTCT_0940  ferredoxin [KO:K00176] [EC:1.2.7.3]
MTCT_0490  succinyl-CoA synthetase alpha subunit [KO:K01902] [EC:6.2.1.5]
MTCT_0944  succinyl-CoA synthetase beta subunit [KO:K01903] [EC:6.2.1.5]
MTCT_0874  fumarate hydratase [KO:K01677] [EC:4.2.1.2]
MTCT_1585  fumarate hydratase [KO:K01677] [EC:4.2.1.2]
MTCT_1742  fumarate hydratase [KO:K01678] [EC:4.2.1.2]
MTCT_1009  fumarate hydratase [KO:K01678] [EC:4.2.1.2]
MTCT_0154  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
MTCT_1749  pyruvate carboxylase subunit A [KO:K01959] [EC:6.4.1.1]
MTCT_1001  pyruvate carboxylase subunit B [KO:K01960] [EC:6.4.1.1]
MTCT_1589  pyruvate ferredoxin oxidoreductase alpha subunit [KO:K00169] [EC:1.2.7.1]
MTCT_1588  pyruvate ferredoxin oxidoreductase beta subunit [KO:K00170] [EC:1.2.7.1]
MTCT_1591  truncated indolepyruvate ferredoxin oxidoreductase [KO:K00172] [EC:1.2.7.1]
MTCT_1590  truncated indolepyruvate ferredoxin oxidoreductase [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
metc00010  Glycolysis / Gluconeogenesis
metc00071  Fatty acid degradation
metc00190  Oxidative phosphorylation
metc00220  Arginine biosynthesis
metc00250  Alanine, aspartate and glutamate metabolism
metc00280  Valine, leucine and isoleucine degradation
metc00350  Tyrosine metabolism
metc00470  D-Amino acid metabolism
metc00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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