KEGG   PATHWAY: meth00020
Entry
meth00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Methanobacterium sp. MB1
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
meth00020  Citrate cycle (TCA cycle)
meth00020

Module
meth_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:meth00020]
Other DBs
GO: 0006099
Organism
Methanobacterium sp. MB1 [GN:meth]
Gene
MBMB1_0277  Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
MBMB1_0181  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
MBMB1_0215  korA; 2-oxoglutarate synthase subunit KorA [KO:K00174] [EC:1.2.7.3 1.2.7.11]
MBMB1_0182  pyruvate ferredoxin/flavodoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
MBMB1_0216  korB; 2-oxoglutarate synthase subunit KorB [KO:K00175] [EC:1.2.7.3 1.2.7.11]
MBMB1_0217  korC; 2-oxoglutarate synthase subunit KorC [KO:K00177] [EC:1.2.7.3]
MBMB1_0214  hypothetical protein [KO:K00176] [EC:1.2.7.3]
MBMB1_1356  sucD; Succinyl-CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
MBMB1_0218  sucC; Succinyl-CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
MBMB1_1306  sdhA; Succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
MBMB1_1307  succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
MBMB1_1544  putative fumarate hydratase subunit alpha [KO:K01677] [EC:4.2.1.2]
MBMB1_1594  Fe-S type, tartrate/fumarate subfamily hydro-lyase subunit alpha [KO:K01677] [EC:4.2.1.2]
MBMB1_1231  Fe-S type, tartrate/fumarate subfamily hydro-lyase subunit alpha [KO:K01678] [EC:4.2.1.2]
MBMB1_1646  fumarate hydratase, FumA [KO:K01678] [EC:4.2.1.2]
MBMB1_1305  fumC2; Fumarate hydratase class II 2 [KO:K01679] [EC:4.2.1.2]
MBMB1_1406  mdh; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
MBMB1_0764  pycA; Pyruvate carboxylase subunit A [KO:K01959] [EC:6.4.1.1]
MBMB1_1635  pycB; Pyruvate carboxylase subunit B [KO:K01960] [EC:6.4.1.1]
MBMB1_1540  porA; Pyruvate synthase subunit PorA [KO:K00169] [EC:1.2.7.1]
MBMB1_1541  porB; Pyruvate synthase subunit PorB [KO:K00170] [EC:1.2.7.1]
MBMB1_1538  porC; Pyruvate synthase subunit PorC [KO:K00172] [EC:1.2.7.1]
MBMB1_1539  hypothetical protein [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
meth00010  Glycolysis / Gluconeogenesis
meth00061  Fatty acid biosynthesis
meth00071  Fatty acid degradation
meth00190  Oxidative phosphorylation
meth00220  Arginine biosynthesis
meth00250  Alanine, aspartate and glutamate metabolism
meth00280  Valine, leucine and isoleucine degradation
meth00350  Tyrosine metabolism
meth00470  D-Amino acid metabolism
meth00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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