KEGG   PATHWAY: metn00020
Entry
metn00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Methanobacterium sp. MZ-A1
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
metn00020  Citrate cycle (TCA cycle)
metn00020

Module
metn_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:metn00020]
Other DBs
GO: 0006099
Organism
Methanobacterium sp. MZ-A1 [GN:metn]
Gene
BK008_07090  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
BK008_06295  2-oxoacid:ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
BK008_06520  2-oxoglutarate synthase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
BK008_06300  2-oxoacid ferredoxin oxidoreductase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
BK008_06525  2-oxoglutarate synthase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
BK008_06530  2-oxoglutarate ferredoxin oxidoreductase subunit gamma [KO:K00177] [EC:1.2.7.3]
BK008_06515  ferredoxin [KO:K00176] [EC:1.2.7.3]
BK008_01305  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
BK008_06535  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
BK008_02335  fumarate hydratase [KO:K01677] [EC:4.2.1.2]
BK008_02605  fumarate hydratase [KO:K01677] [EC:4.2.1.2]
BK008_02885  fumarate hydratase [KO:K01678] [EC:4.2.1.2]
BK008_00530  fumarate hydratase [KO:K01678] [EC:4.2.1.2]
BK008_01575  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BK008_00380  acetyl-CoA carboxylase biotin carboxylase subunit [KO:K01959] [EC:6.4.1.1]
BK008_02830  oxaloacetate decarboxylase subunit alpha [KO:K01960] [EC:6.4.1.1]
BK008_02315  porA; pyruvate ferredoxin oxidoreductase [KO:K00169] [EC:1.2.7.1]
BK008_02320  2-ketoisovalerate ferredoxin oxidoreductase [KO:K00170] [EC:1.2.7.1]
BK008_02305  pyruvate ferredoxin oxidoreductase [KO:K00172] [EC:1.2.7.1]
BK008_02310  pyruvate synthase [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
metn00010  Glycolysis / Gluconeogenesis
metn00061  Fatty acid biosynthesis
metn00071  Fatty acid degradation
metn00190  Oxidative phosphorylation
metn00220  Arginine biosynthesis
metn00250  Alanine, aspartate and glutamate metabolism
metn00280  Valine, leucine and isoleucine degradation
metn00350  Tyrosine metabolism
metn00470  D-Amino acid metabolism
metn00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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