KEGG   PATHWAY: meto00020
Entry
meto00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Methanobacterium sp. BAmetb5
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
meto00020  Citrate cycle (TCA cycle)
meto00020

Module
meto_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:meto00020]
Other DBs
GO: 0006099
Organism
Methanobacterium sp. BAmetb5 [GN:meto]
Gene
CIT02_05525  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
CIT02_05940  2-oxoglutarate synthase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
CIT02_06135  2-oxoacid:ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
CIT02_05935  2-oxoglutarate synthase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
CIT02_06130  2-oxoacid ferredoxin oxidoreductase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
CIT02_05930  2-oxoglutarate ferredoxin oxidoreductase subunit gamma [KO:K00177] [EC:1.2.7.3]
CIT02_05945  ferredoxin family protein [KO:K00176] [EC:1.2.7.3]
CIT02_11200  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
CIT02_05925  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
CIT02_09980  fumarate hydratase [KO:K01677] [EC:4.2.1.2]
CIT02_10240  fumarate hydratase [KO:K01677] [EC:4.2.1.2]
CIT02_09655  fumarate hydratase [KO:K01678] [EC:4.2.1.2]
CIT02_00015  fumarate hydratase [KO:K01678] [EC:4.2.1.2]
CIT02_10955  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
CIT02_00165  accC; acetyl-CoA carboxylase biotin carboxylase subunit [KO:K01959] [EC:6.4.1.1]
CIT02_09730  oadA; oxaloacetate decarboxylase subunit alpha [KO:K01960] [EC:6.4.1.1]
CIT02_10260  porA; pyruvate ferredoxin oxidoreductase [KO:K00169] [EC:1.2.7.1]
CIT02_10255  2-ketoisovalerate ferredoxin oxidoreductase [KO:K00170] [EC:1.2.7.1]
CIT02_10270  pyruvate ferredoxin oxidoreductase [KO:K00172] [EC:1.2.7.1]
CIT02_10265  pyruvate synthase [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
meto00010  Glycolysis / Gluconeogenesis
meto00061  Fatty acid biosynthesis
meto00071  Fatty acid degradation
meto00190  Oxidative phosphorylation
meto00220  Arginine biosynthesis
meto00250  Alanine, aspartate and glutamate metabolism
meto00280  Valine, leucine and isoleucine degradation
meto00350  Tyrosine metabolism
meto00470  D-Amino acid metabolism
meto00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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