KEGG   PATHWAY: metz00020
Entry
metz00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Methanothermobacter sp. MT-2
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
metz00020  Citrate cycle (TCA cycle)
metz00020

Module
metz_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:metz00020]
Other DBs
GO: 0006099
Organism
Methanothermobacter sp. MT-2 [GN:metz]
Gene
METMT2_1484  FAD-dependent pyridine nucleotide-disulfide oxidoreductase [KO:K00382] [EC:1.8.1.4]
METMT2_1059  2-oxoglutarate synthase, subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
METMT2_1060  2-oxoglutarate synthase, subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
METMT2_1061  2-oxoglutarate synthase, subunit gamma [KO:K00177] [EC:1.2.7.3]
METMT2_1058  4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [KO:K00176] [EC:1.2.7.3]
METMT2_0840  succinyl-CoA synthase, subunit alpha [KO:K01902] [EC:6.2.1.5]
METMT2_1062  succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
METMT2_1551  fumarate hydratase [KO:K01677] [EC:4.2.1.2]
METMT2_0981  fumarate hydratase, class I related protein [KO:K01677] [EC:4.2.1.2]
METMT2_0242  fumarate hydratase [KO:K01678] [EC:4.2.1.2]
METMT2_1135  fumarate hydratase [KO:K01678] [EC:4.2.1.2]
METMT2_0653  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
METMT2_0248  pyruvate carboxylase, subunit A [KO:K01959] [EC:6.4.1.1]
METMT2_1127  pyruvate carboxylase, subunit B [KO:K01960] [EC:6.4.1.1]
METMT2_1547  pyruvate synthase, subunit A [KO:K00169] [EC:1.2.7.1]
METMT2_1548  pyruvate synthase, subunit B [KO:K00170] [EC:1.2.7.1]
METMT2_1545  pyruvate synthase, subunit C [KO:K00172] [EC:1.2.7.1]
METMT2_1546  pyruvate synthase, subunit D [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
metz00010  Glycolysis / Gluconeogenesis
metz00061  Fatty acid biosynthesis
metz00071  Fatty acid degradation
metz00190  Oxidative phosphorylation
metz00220  Arginine biosynthesis
metz00250  Alanine, aspartate and glutamate metabolism
metz00280  Valine, leucine and isoleucine degradation
metz00350  Tyrosine metabolism
metz00470  D-Amino acid metabolism
metz00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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