KEGG   PATHWAY: meye00020
Entry
meye00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Methanobrevibacter sp. YE315
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
meye00020  Citrate cycle (TCA cycle)
meye00020

Module
meye_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:meye00020]
Other DBs
GO: 0006099
Organism
Methanobrevibacter sp. YE315 [GN:meye]
Gene
TL18_01435  pyridine nucleotide-disulfide oxidoreductase [KO:K00382] [EC:1.8.1.4]
TL18_08825  2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
TL18_08820  2-oxoglutarate synthase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
TL18_08815  2-oxoglutarate ferredoxin oxidoreductase subunit gamma [KO:K00177] [EC:1.2.7.3]
TL18_06180  hypothetical protein [KO:K01902] [EC:6.2.1.5]
TL18_08810  succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
TL18_02090  fumarate hydratase [KO:K01677] [EC:4.2.1.2]
TL18_02645  fumarate hydratase [KO:K01677] [EC:4.2.1.2]
TL18_08835  fumarate hydratase [KO:K01678] [EC:4.2.1.2]
TL18_07530  fumarate hydratase [KO:K01678] [EC:4.2.1.2]
TL18_05160  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
TL18_07510  pyruvate carboxylase subunit A [KO:K01959] [EC:6.4.1.1]
TL18_08900  pyruvate carboxylase subunit B [KO:K01960] [EC:6.4.1.1]
TL18_02110  porA; pyruvate ferredoxin oxidoreductase [KO:K00169] [EC:1.2.7.1]
TL18_02105  2-ketoisovalerate ferredoxin oxidoreductase [KO:K00170] [EC:1.2.7.1]
TL18_02120  pyruvate ferredoxin oxidoreductase [KO:K00172] [EC:1.2.7.1]
TL18_02115  pyruvate synthase [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
meye00010  Glycolysis / Gluconeogenesis
meye00061  Fatty acid biosynthesis
meye00062  Fatty acid elongation
meye00071  Fatty acid degradation
meye00190  Oxidative phosphorylation
meye00220  Arginine biosynthesis
meye00250  Alanine, aspartate and glutamate metabolism
meye00280  Valine, leucine and isoleucine degradation
meye00350  Tyrosine metabolism
meye00470  D-Amino acid metabolism
meye00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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