KEGG   PATHWAY: mfc00020
Entry
mfc00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Methanobacterium formicicum BRM9
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mfc00020  Citrate cycle (TCA cycle)
mfc00020

Module
mfc_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mfc00020]
Other DBs
GO: 0006099
Organism
Methanobacterium formicicum BRM9 [GN:mfc]
Gene
BRM9_2003  dihydrolipoamide dehydrogenase-related protein [KO:K00382] [EC:1.8.1.4]
BRM9_2084  korA; 2-oxoglutarate ferredoxin oxidoreductase subunit alpha KorA [KO:K00174] [EC:1.2.7.3 1.2.7.11]
BRM9_2122  2-oxoacid ferredoxin oxidoreductase alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
BRM9_2083  korB; 2-oxoglutarate ferredoxin oxidoreductase subunit beta KorB [KO:K00175] [EC:1.2.7.3 1.2.7.11]
BRM9_2121  2-oxoacid ferredoxin oxidoreductase beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
BRM9_2082  korC; 2-oxoglutarate ferredoxin oxidoreductase subunit gamma KorC [KO:K00177] [EC:1.2.7.3]
BRM9_2085  korD; 2-oxoglutarate ferredoxin oxidoreductase subunit delta KorD [KO:K00176] [EC:1.2.7.3]
BRM9_0581  sucD; succinate-CoA ligase alpha subunit SucD [KO:K01902] [EC:6.2.1.5]
BRM9_2081  sucC; succinyl-CoA synthetase beta subunit SucC [KO:K01903] [EC:6.2.1.5]
BRM9_0775  fumA2; fumarate hydratase FumA2 [KO:K01677] [EC:4.2.1.2]
BRM9_0829  fumA3; fumarate hydratase FumA3 [KO:K01677] [EC:4.2.1.2]
BRM9_0900  fumA4; fumarate hydratase FumA4 [KO:K01678] [EC:4.2.1.2]
BRM9_0439  fumA1; fumarate hydratase FumA1 [KO:K01678] [EC:4.2.1.2]
BRM9_0641  mdh; malate dehydrogenase Mdh [KO:K00024] [EC:1.1.1.37]
BRM9_0410  pycA; pyruvate carboxylase subunit A PycA [KO:K01959] [EC:6.4.1.1]
BRM9_0885  pycB; pyruvate carboxylase subunit B PycB [KO:K01960] [EC:6.4.1.1]
BRM9_0771  porA; pyruvate ferredoxin oxidoreductase alpha subunit PorA [KO:K00169] [EC:1.2.7.1]
BRM9_0772  porB; pyruvate ferredoxin oxidoreductase beta subunit PorB [KO:K00170] [EC:1.2.7.1]
BRM9_0769  porC; pyruvate ferredoxin oxidoreductase gamma subunit PorC [KO:K00172] [EC:1.2.7.1]
BRM9_0770  porD; pyruvate ferredoxin oxidoreductase delta subunit PorD [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mfc00010  Glycolysis / Gluconeogenesis
mfc00061  Fatty acid biosynthesis
mfc00071  Fatty acid degradation
mfc00190  Oxidative phosphorylation
mfc00220  Arginine biosynthesis
mfc00250  Alanine, aspartate and glutamate metabolism
mfc00280  Valine, leucine and isoleucine degradation
mfc00350  Tyrosine metabolism
mfc00470  D-Amino acid metabolism
mfc00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system