KEGG   PATHWAY: mfeg00020
Entry
mfeg00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Methanobacterium ferruginis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mfeg00020  Citrate cycle (TCA cycle)
mfeg00020

Module
mfeg_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mfeg00020]
Other DBs
GO: 0006099
Organism
Methanobacterium ferruginis [GN:mfeg]
Gene
GCM10025860_11330  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
GCM10025860_09940  2-oxoacid:ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
GCM10025860_10360  2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
GCM10025860_10370  2-oxoglutarate synthase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
GCM10025860_10380  2-oxoglutarate ferredoxin oxidoreductase subunit gamma [KO:K00177] [EC:1.2.7.3]
GCM10025860_10350  ferredoxin [KO:K00176] [EC:1.2.7.3]
GCM10025860_27530  hypothetical protein [KO:K01902] [EC:6.2.1.5]
GCM10025860_10390  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
GCM10025860_00780  fumarate hydratase [KO:K01677] [EC:4.2.1.2]
GCM10025860_01370  fumarate hydratase [KO:K01677] [EC:4.2.1.2]
GCM10025860_02330  fumarate hydratase [KO:K01678] [EC:4.2.1.2]
GCM10025860_25630  fumarate hydratase [KO:K01678] [EC:4.2.1.2]
GCM10025860_28090  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
GCM10025860_25340  biotin carboxylase [KO:K01959] [EC:6.4.1.1]
GCM10025860_02200  hypothetical protein [KO:K01960] [EC:6.4.1.1]
GCM10025860_00700  porA; 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha [KO:K00169] [EC:1.2.7.1]
GCM10025860_00710  pyruvate ferredoxin oxidoreductase subunit beta [KO:K00170] [EC:1.2.7.1]
GCM10025860_00680  hypothetical protein [KO:K00172] [EC:1.2.7.1]
GCM10025860_00690  hypothetical protein [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mfeg00010  Glycolysis / Gluconeogenesis
mfeg00061  Fatty acid biosynthesis
mfeg00071  Fatty acid degradation
mfeg00190  Oxidative phosphorylation
mfeg00220  Arginine biosynthesis
mfeg00250  Alanine, aspartate and glutamate metabolism
mfeg00280  Valine, leucine and isoleucine degradation
mfeg00350  Tyrosine metabolism
mfeg00470  D-Amino acid metabolism
mfeg00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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