KEGG   PATHWAY: mhu00020
Entry
mhu00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Methanospirillum hungatei
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mhu00020  Citrate cycle (TCA cycle)
mhu00020

Module
mhu_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mhu00020]
Other DBs
GO: 0006099
Organism
Methanospirillum hungatei [GN:mhu]
Gene
Mhun_2635  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Mhun_0092  2-oxoglutarate ferredoxin oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Mhun_2992  pyruvate flavodoxin/ferredoxin oxidoreductase-like protein [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Mhun_0093  2-oxoglutarate ferredoxin oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Mhun_2993  thiamine pyrophosphate enzyme-like TPP-binding protein [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Mhun_0094  2-oxoglutarate ferredoxin oxidoreductase, gamma subunit [KO:K00177] [EC:1.2.7.3]
Mhun_0091  2-oxoglutarate ferredoxin oxidoreductase, delta subunit [KO:K00176] [EC:1.2.7.3]
Mhun_0096  succinyl-CoA synthetase (ADP-forming) alpha subunit [KO:K01902] [EC:6.2.1.5]
Mhun_0095  succinyl-CoA synthetase (ADP-forming) beta subunit [KO:K01903] [EC:6.2.1.5]
Mhun_0089  fumarase alpha subunit [KO:K01677] [EC:4.2.1.2]
Mhun_0090  fumarase beta subunit [KO:K01678] [EC:4.2.1.2]
Mhun_2343  malate dehydrogenase (NAD) [KO:K00024] [EC:1.1.1.37]
Mhun_1155  malate dehydrogenase (NAD) [KO:K00024] [EC:1.1.1.37]
Mhun_3190  pyruvate carboxylase subunit A [KO:K01959] [EC:6.4.1.1]
Mhun_3189  pyruvate carboxylase subunit B [KO:K01960] [EC:6.4.1.1]
Mhun_2395  pyruvate flavodoxin/ferredoxin oxidoreductase-like protein [KO:K00169] [EC:1.2.7.1]
Mhun_0452  pyruvate ferredoxin oxidoreductase, alpha subunit [KO:K00169] [EC:1.2.7.1]
Mhun_0453  pyruvate ferredoxin oxidoreductase, beta subunit [KO:K00170] [EC:1.2.7.1]
Mhun_2396  thiamine pyrophosphate enzyme-like TPP-binding protein [KO:K00170] [EC:1.2.7.1]
Mhun_2394  pyruvate ferredoxin oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
Mhun_0450  pyruvate ferredoxin oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
Mhun_0451  pyruvate ferredoxin oxidoreductase, delta subunit [KO:K00171] [EC:1.2.7.1]
Mhun_2393  2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mhu00010  Glycolysis / Gluconeogenesis
mhu00061  Fatty acid biosynthesis
mhu00071  Fatty acid degradation
mhu00190  Oxidative phosphorylation
mhu00220  Arginine biosynthesis
mhu00250  Alanine, aspartate and glutamate metabolism
mhu00280  Valine, leucine and isoleucine degradation
mhu00350  Tyrosine metabolism
mhu00470  D-Amino acid metabolism
mhu00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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