KEGG   PATHWAY: miv00630
Entry
miv00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Microvirga sp. 17 mud 1-3
Class
Metabolism; Carbohydrate metabolism
Pathway map
miv00630  Glyoxylate and dicarboxylate metabolism
miv00630

Module
miv_M00012  Glyoxylate cycle [PATH:miv00630]
miv_M00621  Glycine cleavage system [PATH:miv00630]
miv_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:miv00630]
Other DBs
GO: 0046487 0043648
Organism
Microvirga sp. 17 mud 1-3 [GN:miv]
Gene
C4E04_01845  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
C4E04_01760  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
C4E04_06015  acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
C4E04_15685  malate synthase G [KO:K01638] [EC:2.3.3.9]
C4E04_02085  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
C4E04_06785  citrate synthase [KO:K01647] [EC:2.3.3.1]
C4E04_06790  citrate synthase/methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
C4E04_09875  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
C4E04_10380  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
C4E04_20010  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
C4E04_02210  thiolase domain-containing protein [KO:K00626] [EC:2.3.1.9]
C4E04_02895  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
C4E04_16600  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
C4E04_02890  beta-ketoacyl-ACP reductase [KO:K00023] [EC:1.1.1.36]
C4E04_09340  mce; methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
C4E04_08205  acetyl/propionyl-CoA carboxylase subunit alpha [KO:K01965] [EC:6.4.1.3]
C4E04_08185  methylmalonyl-CoA carboxyltransferase [KO:K01966] [EC:6.4.1.3 2.1.3.15]
C4E04_13460  methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
C4E04_13480  methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
C4E04_16145  FAD-binding oxidoreductase [KO:K00104] [EC:1.1.99.14]
C4E04_16140  glycolate oxidase subunit GlcE [KO:K11472] [EC:1.1.99.14]
C4E04_16130  glycolate oxidase iron-sulfur subunit [KO:K11473] [EC:1.1.99.14]
C4E04_00855  catalase [KO:K03781] [EC:1.11.1.6]
C4E04_05945  catalase [KO:K03781] [EC:1.11.1.6]
C4E04_20220  D-glycerate dehydrogenase [KO:K00015] [EC:1.1.1.26]
C4E04_15510  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
C4E04_05515  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
C4E04_08170  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
C4E04_14765  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
C4E04_20085  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
C4E04_09190  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
C4E04_16525  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
C4E04_09635  glyA; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
C4E04_14630  aminomethyl-transferring glycine dehydrogenase subunit GcvPA [KO:K00282] [EC:1.4.4.2]
C4E04_14625  aminomethyl-transferring glycine dehydrogenase subunit GcvPB [KO:K00283] [EC:1.4.4.2]
C4E04_14645  glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
C4E04_02115  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
C4E04_10005  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
C4E04_15780  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
C4E04_14640  gcvH; glycine cleavage system protein GcvH [KO:K02437]
C4E04_04880  glycerate kinase [KO:K11529] [EC:2.7.1.165]
C4E04_17740  keto-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
C4E04_06020  NADH-quinone oxidoreductase subunit D [KO:K00124]
C4E04_11030  alpha/beta hydrolase [KO:K01432] [EC:3.5.1.9]
C4E04_13035  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
miv00010  Glycolysis / Gluconeogenesis
miv00020  Citrate cycle (TCA cycle)
miv00030  Pentose phosphate pathway
miv00053  Ascorbate and aldarate metabolism
miv00071  Fatty acid degradation
miv00230  Purine metabolism
miv00250  Alanine, aspartate and glutamate metabolism
miv00260  Glycine, serine and threonine metabolism
miv00620  Pyruvate metabolism
miv00710  Carbon fixation by Calvin cycle
miv00750  Vitamin B6 metabolism
miv00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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