KEGG   PATHWAY: mjn00020
Entry
mjn00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Metallosphaera javensis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mjn00020  Citrate cycle (TCA cycle)
mjn00020

Module
mjn_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:mjn00020]
mjn_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:mjn00020]
mjn_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mjn00020]
mjn_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:mjn00020]
mjn_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mjn00020]
Other DBs
GO: 0006099
Organism
Metallosphaera javensis [GN:mjn]
Gene
MjAS7_0904  citrate synthase [KO:K01647] [EC:2.3.3.1]
MjAS7_2620  citrate synthase [KO:K01647] [EC:2.3.3.1]
MjAS7_2561  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
MjAS7_1469  isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
MjAS7_0271  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
MjAS7_0310  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
MjAS7_2082  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
MjAS7_2649  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
MjAS7_1275  2-oxoacid:ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
MjAS7_1274  2-oxoacid ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
MjAS7_2679  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
MjAS7_2680  succinate--CoA ligase [KO:K01903] [EC:6.2.1.5]
MjAS7_2225  acetyl-CoA hydrolase/transferase family protein [KO:K18118] [EC:2.8.3.18]
MjAS7_1443  succinate dehydrogenase / fumarate reductase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
MjAS7_1442  succinate dehydrogenase / fumarate reductase, iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
MjAS7_1441  succinate dehydrogenase / fumarate reductase cytochrome b subunit [KO:K00241]
MjAS7_1440  succinate dehydrogenase / fumarate reductase, subunit D [KO:K18859]
MjAS7_2555  fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
MjAS7_1171  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
MjAS7_2545  phosphoenolpyruvate carboxykinase [GTP] [KO:K01596] [EC:4.1.1.32]
MjAS7_0934  pyruvate synthase subunit PorA [KO:K00169] [EC:1.2.7.1]
MjAS7_1250  pyruvate synthase subunit PorA [KO:K00169] [EC:1.2.7.1]
MjAS7_2203  pyruvate synthase subunit PorA [KO:K00169] [EC:1.2.7.1]
MjAS7_0935  pyruvate synthase subunit PorB [KO:K00170] [EC:1.2.7.1]
MjAS7_1251  pyruvate synthase subunit PorB [KO:K00170] [EC:1.2.7.1]
MjAS7_2202  pyruvate synthase subunit PorB [KO:K00170] [EC:1.2.7.1]
MjAS7_0932  pyruvate synthase [KO:K00172] [EC:1.2.7.1]
MjAS7_1248  pyruvate synthase subunit PorC [KO:K00172] [EC:1.2.7.1]
MjAS7_0933  pyruvate synthase subunit PorD [KO:K00171] [EC:1.2.7.1]
MjAS7_1249  pyruvate synthase subunit PorD [KO:K00171] [EC:1.2.7.1]
MjAS7_2204  pyruvate ferredoxin oxidoreductase subunit gamma/delta [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mjn00010  Glycolysis / Gluconeogenesis
mjn00061  Fatty acid biosynthesis
mjn00071  Fatty acid degradation
mjn00190  Oxidative phosphorylation
mjn00220  Arginine biosynthesis
mjn00250  Alanine, aspartate and glutamate metabolism
mjn00280  Valine, leucine and isoleucine degradation
mjn00350  Tyrosine metabolism
mjn00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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