KEGG   PATHWAY: mkc00630
Entry
mkc00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Methylacidiphilum kamchatkense
Class
Metabolism; Carbohydrate metabolism
Pathway map
mkc00630  Glyoxylate and dicarboxylate metabolism
mkc00630

Module
mkc_M00621  Glycine cleavage system [PATH:mkc00630]
Other DBs
GO: 0046487 0043648
Organism
Methylacidiphilum kamchatkense [GN:mkc]
Gene
kam1_923  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
kam1_1970  acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
kam1_924  malate synthase [KO:K01638] [EC:2.3.3.9]
kam1_1390  malate dehydrogenase (NAD) [KO:K00024] [EC:1.1.1.37]
kam1_1044  aconitase [KO:K01681] [EC:4.2.1.3]
kam1_509  glycolate oxidase [KO:K00104] [EC:1.1.99.14]
kam1_926  glycolate oxidase [KO:K00104] [EC:1.1.99.14]
kam1_1365  glycolate oxidase [KO:K00104] [EC:1.1.99.14]
kam1_927  glycolate oxidase FAD binding subunit [KO:K11472] [EC:1.1.99.14]
kam1_928  glycolate oxidase iron-sulfur subunit [KO:K11473] [EC:1.1.99.14]
kam1_1366  glycolate oxidase iron-sulfur subunit [KO:K11473] [EC:1.1.99.14]
kam1_727  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
kam1_716  phosphoglycolate phosphatase-like HAD superfamily hydrolase [KO:K01091] [EC:3.1.3.18]
kam1_1255  cbbL; ribulose-bisphosphate carboxylase large chain [KO:K01601] [EC:4.1.1.39]
kam1_1254  cbbS; ribulose 1,5-bisphosphate carboxylase small subunit [KO:K01602] [EC:4.1.1.39]
kam1_1344  alanine-glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
kam1_2072  glutamate synthase domain-containing protein 2 [KO:K00284] [EC:1.4.7.1]
kam1_1195  glnA; L-glutamine synthetase [KO:K01915] [EC:6.3.1.2]
kam1_693  glycine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
kam1_164  glycine dehydrogenase (decarboxylating) alpha subunit/glycine dehydrogenase (decarboxylating) beta subunit [KO:K00281] [EC:1.4.4.2]
kam1_166  aminomethyltransferase [KO:K00605] [EC:2.1.2.10]
kam1_1020  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
kam1_70  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
kam1_1193  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
kam1_165  glycine cleavage system H protein [KO:K02437]
kam1_1335  hpr; formate dehydrogenase [KO:K00122] [EC:1.17.1.9]
kam1_1220  formate dehydrogenase delta subunit [KO:K00126] [EC:1.17.1.9]
kam1_1221  formate dehydrogenase major subunit [KO:K00123] [EC:1.17.1.9]
kam1_1222  formate dehydrogenase beta subunit [KO:K00124]
kam1_1224  formate dehydrogenase gamma subunit [KO:K00127]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
mkc00010  Glycolysis / Gluconeogenesis
mkc00020  Citrate cycle (TCA cycle)
mkc00030  Pentose phosphate pathway
mkc00053  Ascorbate and aldarate metabolism
mkc00071  Fatty acid degradation
mkc00230  Purine metabolism
mkc00250  Alanine, aspartate and glutamate metabolism
mkc00260  Glycine, serine and threonine metabolism
mkc00620  Pyruvate metabolism
mkc00710  Carbon fixation by Calvin cycle
mkc00750  Vitamin B6 metabolism
mkc00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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