KEGG   PATHWAY: mmq00020
Entry
mmq00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Methanococcus maripaludis C5
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mmq00020  Citrate cycle (TCA cycle)
mmq00020

Module
mmq_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mmq00020]
Other DBs
GO: 0006099
Organism
Methanococcus maripaludis C5 [GN:mmq]
Gene
MmarC5_0261  FAD-dependent pyridine nucleotide-disulfide oxidoreductase [KO:K00382] [EC:1.8.1.4]
MmarC5_1681  2-oxoglutarate ferredoxin oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
MmarC5_1368  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00174] [EC:1.2.7.3 1.2.7.11]
MmarC5_1369  pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
MmarC5_0277  2-oxoglutarate ferredoxin oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
MmarC5_0278  2-oxoglutarate ferredoxin oxidoreductase, gamma subunit [KO:K00177] [EC:1.2.7.3]
MmarC5_1719  2-oxoglutarate ferredoxin oxidoreductase, delta subunit [KO:K00176] [EC:1.2.7.3]
MmarC5_0780  succinyl-CoA synthetase (ADP-forming) alpha subunit [KO:K01902] [EC:6.2.1.5]
MmarC5_0479  succinyl-CoA synthetase (ADP-forming) beta subunit [KO:K01903] [EC:6.2.1.5]
MmarC5_1548  fumarase alpha subunit [KO:K01677] [EC:4.2.1.2]
MmarC5_0028  fumarase beta subunit [KO:K01678] [EC:4.2.1.2]
MmarC5_0959  Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
MmarC5_1333  pyruvate carboxylase subunit A [KO:K01959] [EC:6.4.1.1]
MmarC5_1334  pyruvate carboxylase subunit B [KO:K01960] [EC:6.4.1.1]
MmarC5_0072  pyruvate ferredoxin oxidoreductase, alpha subunit [KO:K00169] [EC:1.2.7.1]
MmarC5_0073  pyruvate ferredoxin oxidoreductase, beta subunit [KO:K00170] [EC:1.2.7.1]
MmarC5_0070  pyruvate/ketoisovalerate oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
MmarC5_0071  pyruvate ferredoxin oxidoreductase, delta subunit [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mmq00010  Glycolysis / Gluconeogenesis
mmq00071  Fatty acid degradation
mmq00190  Oxidative phosphorylation
mmq00220  Arginine biosynthesis
mmq00250  Alanine, aspartate and glutamate metabolism
mmq00280  Valine, leucine and isoleucine degradation
mmq00350  Tyrosine metabolism
mmq00470  D-Amino acid metabolism
mmq00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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