KEGG   PATHWAY: mmz00020
Entry
mmz00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Methanococcus maripaludis C7
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mmz00020  Citrate cycle (TCA cycle)
mmz00020

Module
mmz_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mmz00020]
Other DBs
GO: 0006099
Organism
Methanococcus maripaludis C7 [GN:mmz]
Gene
MmarC7_0577  FAD-dependent pyridine nucleotide-disulphide oxidoreductase [KO:K00382] [EC:1.8.1.4]
MmarC7_1000  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00174] [EC:1.2.7.3 1.2.7.11]
MmarC7_1308  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00174] [EC:1.2.7.3 1.2.7.11]
MmarC7_0561  thiamine pyrophosphate protein domain protein TPP-binding [KO:K00175] [EC:1.2.7.3 1.2.7.11]
MmarC7_1307  pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
MmarC7_0560  pyruvate ferredoxin/flavodoxin oxidoreductase [KO:K00177] [EC:1.2.7.3]
MmarC7_0962  4Fe-4S ferredoxin iron-sulfur binding domain protein [KO:K00176] [EC:1.2.7.3]
MmarC7_0202  succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
MmarC7_0357  succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
MmarC7_1129  hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit [KO:K01677] [EC:4.2.1.2]
MmarC7_0796  hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit [KO:K01678] [EC:4.2.1.2]
MmarC7_1669  Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
MmarC7_1342  acetyl-CoA carboxylase, biotin carboxylase [KO:K01959] [EC:6.4.1.1]
MmarC7_1341  oxaloacetate decarboxylase alpha subunit [KO:K01960] [EC:6.4.1.1]
MmarC7_0749  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00169] [EC:1.2.7.1]
MmarC7_0748  thiamine pyrophosphate protein domain protein TPP-binding [KO:K00170] [EC:1.2.7.1]
MmarC7_0751  pyruvate/ketoisovalerate oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
MmarC7_0750  pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mmz00010  Glycolysis / Gluconeogenesis
mmz00071  Fatty acid degradation
mmz00190  Oxidative phosphorylation
mmz00220  Arginine biosynthesis
mmz00250  Alanine, aspartate and glutamate metabolism
mmz00280  Valine, leucine and isoleucine degradation
mmz00350  Tyrosine metabolism
mmz00470  D-Amino acid metabolism
mmz00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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