KEGG   PATHWAY: mng00020
Entry
mng00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Monoraphidium neglectum
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mng00020  Citrate cycle (TCA cycle)
mng00020

Module
mng_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mng00020]
Other DBs
GO: 0006099
Organism
Monoraphidium neglectum [GN:mng]
Gene
MNEG_4939  citrate synthase [KO:K01647] [EC:2.3.3.1]
MNEG_2323  ATP citrate (pro-S)-lyase [KO:K01648] [EC:2.3.3.8]
MNEG_4257  ATP citrate (pro-S)-lyase [KO:K01648] [EC:2.3.3.8]
MNEG_3833  aconitase 2 [KO:K01681] [EC:4.2.1.3]
MNEG_1234  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
MNEG_9184  isocitrate dehydrogenase (NAD+) [KO:K00030] [EC:1.1.1.41]
MNEG_11126  isocitrate dehydrogenase (NAD+) [KO:K00030] [EC:1.1.1.41]
MNEG_10903  succinyl-CoA synthetase alpha subunit [KO:K01899] [EC:6.2.1.4 6.2.1.5]
MNEG_15042  succinate dehydrogenase (ubiquinone)flavoprotein subunit [KO:K00234] [EC:1.3.5.1]
MNEG_7619  succinate dehydrogenase (ubiquinone) iron-sulfur protein [KO:K00235] [EC:1.3.5.1]
MNEG_9410  fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
MNEG_15954  malate dehydrogenase [KO:K00025] [EC:1.1.1.37]
MNEG_7251  malate dehydrogenase [KO:K00026] [EC:1.1.1.37]
MNEG_4763  malate dehydrogenase [KO:K00026] [EC:1.1.1.37]
MNEG_13393  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
MNEG_2499  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
MNEG_8717  pyruvate dehydrogenase E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
MNEG_10719  pyruvate dehydrogenase E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
MNEG_4864  pyruvate dehydrogenase E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
MNEG_6833  pyruvate dehydrogenase E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
MNEG_14781  pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase) [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mng00010  Glycolysis / Gluconeogenesis
mng00053  Ascorbate and aldarate metabolism
mng00061  Fatty acid biosynthesis
mng00062  Fatty acid elongation
mng00071  Fatty acid degradation
mng00190  Oxidative phosphorylation
mng00220  Arginine biosynthesis
mng00250  Alanine, aspartate and glutamate metabolism
mng00280  Valine, leucine and isoleucine degradation
mng00350  Tyrosine metabolism
mng00470  D-Amino acid metabolism
mng00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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