KEGG   PATHWAY: mou00020
Entry
mou00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Methanogenium organophilum
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mou00020  Citrate cycle (TCA cycle)
mou00020

Module
mou_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mou00020]
Other DBs
GO: 0006099
Organism
Methanogenium organophilum [GN:mou]
Gene
OU421_02945  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
OU421_10080  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
OU421_02950  thiamine pyrophosphate-dependent enzyme [KO:K00175] [EC:1.2.7.3 1.2.7.11]
OU421_10085  thiamine pyrophosphate-dependent enzyme [KO:K00175] [EC:1.2.7.3 1.2.7.11]
OU421_02955  2-oxoacid:ferredoxin oxidoreductase subunit gamma [KO:K00177] [EC:1.2.7.3]
OU421_02940  ferredoxin family protein [KO:K00176] [EC:1.2.7.3]
OU421_02965  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
OU421_02960  succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
OU421_02930  fumarate hydratase [KO:K01677] [EC:4.2.1.2]
OU421_02935  FumA C-terminus/TtdB family hydratase beta subunit [KO:K01678] [EC:4.2.1.2]
OU421_06905  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
OU421_09455  lactate dehydrogenase [KO:K00024] [EC:1.1.1.37]
OU421_01345  acetyl-CoA carboxylase biotin carboxylase subunit [KO:K01959] [EC:6.4.1.1]
OU421_01340  pyruvate/oxaloacetate carboxyltransferase [KO:K01960] [EC:6.4.1.1]
OU421_08000  porA; pyruvate ferredoxin oxidoreductase [KO:K00169] [EC:1.2.7.1]
OU421_09190  porA; pyruvate ferredoxin oxidoreductase [KO:K00169] [EC:1.2.7.1]
OU421_08005  thiamine pyrophosphate-dependent enzyme [KO:K00170] [EC:1.2.7.1]
OU421_09185  thiamine pyrophosphate-dependent enzyme [KO:K00170] [EC:1.2.7.1]
OU421_07995  2-oxoacid:acceptor oxidoreductase family protein [KO:K00172] [EC:1.2.7.1]
OU421_09200  pyruvate ferredoxin oxidoreductase subunit gamma [KO:K00172] [EC:1.2.7.1]
OU421_07990  4Fe-4S binding protein [KO:K00171] [EC:1.2.7.1]
OU421_09195  4Fe-4S binding protein [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mou00010  Glycolysis / Gluconeogenesis
mou00061  Fatty acid biosynthesis
mou00071  Fatty acid degradation
mou00190  Oxidative phosphorylation
mou00220  Arginine biosynthesis
mou00250  Alanine, aspartate and glutamate metabolism
mou00280  Valine, leucine and isoleucine degradation
mou00350  Tyrosine metabolism
mou00470  D-Amino acid metabolism
mou00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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