KEGG   PATHWAY: mpah04136
Entry
mpah04136                   Pathway                                
Name
Autophagy - other - Mus pahari (shrew mouse)
Description
Autophagy is a degradative pathway for the removal of cytoplasmic materials in eukaryotic cells, and is characterized by the formation of a double-membrane structure called the autophagosome, either in a housekeeping capacity or during stress and senescence. The process of autophagy could be divided into several stages: induction, vesicle nucleation, elongation and closure, and fusion and digestion. Most essential autophagic machineries are conserved throughout eukaryotes (see map04140 for animals and map04138 for fungi). This map is for other eukaryotes including plants and protists, where autophagy related genes (ATGs) play similar roles in the life cycle. However, autophagy has been relatively less studied in lower eukaryotes.
Class
Cellular Processes; Transport and catabolism
Pathway map
mpah04136  Autophagy - other
mpah04136

Other DBs
GO: 0006914
Organism
Mus pahari (shrew mouse) [GN:mpah]
Gene
110331504  Rptor; regulatory-associated protein of mTOR isoform X1 [KO:K07204]
110323363  Mtor; serine/threonine-protein kinase mTOR [KO:K07203] [EC:2.7.11.1]
110337886  Mlst8; target of rapamycin complex subunit LST8 isoform X1 [KO:K08266]
110331327  Ulk2; serine/threonine-protein kinase ULK2 [KO:K08269] [EC:2.7.11.1]
110317587  Atg13; autophagy-related protein 13 isoform X1 [KO:K08331]
110334989  Atg101; autophagy-related protein 101 [KO:K19730]
110313591  Igbp1; immunoglobulin-binding protein 1 [KO:K17606]
110317344  immunoglobulin-binding protein 1b [KO:K17606]
110336304  Ppp2cb; serine/threonine-protein phosphatase 2A catalytic subunit beta isoform isoform X1 [KO:K04382] [EC:3.1.3.16]
110331422  Ppp2ca; serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform [KO:K04382] [EC:3.1.3.16]
110317027  Atg9b; autophagy-related protein 9B [KO:K17907]
110321239  Atg9a; autophagy-related protein 9A [KO:K17907]
110324091  Atg2b; autophagy-related protein 2 homolog B [KO:K17906]
110330064  Atg2a; autophagy-related protein 2 homolog A isoform X1 [KO:K17906]
110331591  Wipi1; WD repeat domain phosphoinositide-interacting protein 1 [KO:K17908]
110339041  Wipi2; WD repeat domain phosphoinositide-interacting protein 2 isoform X1 [KO:K17908]
110331121  Becn1; beclin-1 isoform X1 [KO:K08334]
110332837  Pik3c3; phosphatidylinositol 3-kinase catalytic subunit type 3 isoform X1 [KO:K00914] [EC:2.7.1.137]
110327680  Pik3r4; phosphoinositide 3-kinase regulatory subunit 4 [KO:K08333] [EC:2.7.11.1]
110333306  Atg12; ubiquitin-like protein ATG12 [KO:K08336]
110326534  Atg5; autophagy protein 5 isoform X1 [KO:K08339]
110322409  Atg16l1; autophagy-related protein 16-1 isoform X1 [KO:K17890]
110317242  Atg7; ubiquitin-like modifier-activating enzyme ATG7 isoform X1 [KO:K08337]
110329169  Atg10; ubiquitin-like-conjugating enzyme ATG10 [KO:K17888]
110329543  Atg3; ubiquitin-like-conjugating enzyme ATG3 [KO:K08343]
110316298  Gabarapl1; gamma-aminobutyric acid receptor-associated protein-like 1 [KO:K08341]
110331608  Gabarap; gamma-aminobutyric acid receptor-associated protein [KO:K08341]
110337422  Gabarapl2; gamma-aminobutyric acid receptor-associated protein-like 2 [KO:K08341]
110313487  Atg4a; cysteine protease ATG4A [KO:K08342] [EC:3.4.22.-]
110327229  Atg4d; cysteine protease ATG4D [KO:K08342] [EC:3.4.22.-]
110323331  Atg4c; cysteine protease ATG4C [KO:K08342] [EC:3.4.22.-]
110321222  Atg4b; cysteine protease ATG4B [KO:K08342] [EC:3.4.22.-]
Compound
C00350  Phosphatidylethanolamine
C01194  1-Phosphatidyl-D-myo-inositol
C04549  1-Phosphatidyl-1D-myo-inositol 3-phosphate
Reference
  Authors
Duszenko M, Ginger ML, Brennand A, Gualdron-Lopez M, Colombo MI, Coombs GH, Coppens I, Jayabalasingham B, Langsley G, de Castro SL, Menna-Barreto R, Mottram JC, Navarro M, Rigden DJ, Romano PS, Stoka V, Turk B, Michels PA
  Title
Autophagy in protists.
  Journal
Autophagy 7:127-58 (2011)
DOI:10.4161/auto.7.2.13310
Reference
  Authors
Avin-Wittenberg T, Honig A, Galili G
  Title
Variations on a theme: plant autophagy in comparison to yeast and mammals.
  Journal
Protoplasma 249:285-99 (2012)
DOI:10.1007/s00709-011-0296-z
Reference
  Authors
Liu Y, Bassham DC
  Title
Autophagy: pathways for self-eating in plant cells.
  Journal
Annu Rev Plant Biol 63:215-37 (2012)
DOI:10.1146/annurev-arplant-042811-105441
Reference
  Authors
Yoshimoto K
  Title
Beginning to understand autophagy, an intracellular self-degradation system in plants.
  Journal
Plant Cell Physiol 53:1355-65 (2012)
DOI:10.1093/pcp/pcs099
Reference
  Authors
Li F, Chung T, Vierstra RD
  Title
AUTOPHAGY-RELATED11 plays a critical role in general autophagy- and senescence-induced mitophagy in Arabidopsis.
  Journal
Plant Cell 26:788-807 (2014)
DOI:10.1105/tpc.113.120014
Reference
  Authors
Michaeli S, Galili G, Genschik P, Fernie AR, Avin-Wittenberg T
  Title
Autophagy in Plants--What's New on the Menu?
  Journal
Trends Plant Sci 21:134-44 (2016)
DOI:10.1016/j.tplants.2015.10.008
Reference
  Authors
Yang X, Bassham DC
  Title
New Insight into the Mechanism and Function of Autophagy in Plant Cells.
  Journal
Int Rev Cell Mol Biol 320:1-40 (2015)
DOI:10.1016/bs.ircmb.2015.07.005
KO pathway
ko04136   
LinkDB

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