KEGG   PATHWAY: mpl00020
Entry
mpl00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Methanosphaerula palustris
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mpl00020  Citrate cycle (TCA cycle)
mpl00020

Module
mpl_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mpl00020]
Other DBs
GO: 0006099
Organism
Methanosphaerula palustris [GN:mpl]
Gene
Mpal_1205  FAD-dependent pyridine nucleotide-disulphide oxidoreductase [KO:K00382] [EC:1.8.1.4]
Mpal_1524  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Mpal_1949  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Mpal_1523  2-oxoglutarate synthase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Mpal_1948  thiamine pyrophosphate protein domain protein TPP-binding [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Mpal_1947  pyruvate ferredoxin/flavodoxin oxidoreductase [KO:K00177] [EC:1.2.7.3]
Mpal_1950  4Fe-4S ferredoxin iron-sulfur binding domain protein [KO:K00176] [EC:1.2.7.3]
Mpal_1945  succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
Mpal_1946  succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
Mpal_1952  hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit [KO:K01677] [EC:4.2.1.2]
Mpal_1951  hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit [KO:K01678] [EC:4.2.1.2]
Mpal_2590  L-lactate dehydrogenase [KO:K00024] [EC:1.1.1.37]
Mpal_1741  Lactate/malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
Mpal_1009  Carbamoyl-phosphate synthase L chain ATP-binding [KO:K01959] [EC:6.4.1.1]
Mpal_1010  oxaloacetate decarboxylase alpha subunit [KO:K01960] [EC:6.4.1.1]
Mpal_2014  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00169] [EC:1.2.7.1]
Mpal_2717  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00169] [EC:1.2.7.1]
Mpal_2716  thiamine pyrophosphate protein domain protein TPP-binding [KO:K00170] [EC:1.2.7.1]
Mpal_2013  thiamine pyrophosphate protein domain protein TPP-binding [KO:K00170] [EC:1.2.7.1]
Mpal_2016  pyruvate/ketoisovalerate oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
Mpal_2718  pyruvate/ketoisovalerate oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
Mpal_2015  pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [KO:K00171] [EC:1.2.7.1]
Mpal_2719  pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mpl00010  Glycolysis / Gluconeogenesis
mpl00061  Fatty acid biosynthesis
mpl00071  Fatty acid degradation
mpl00190  Oxidative phosphorylation
mpl00220  Arginine biosynthesis
mpl00250  Alanine, aspartate and glutamate metabolism
mpl00280  Valine, leucine and isoleucine degradation
mpl00350  Tyrosine metabolism
mpl00470  D-Amino acid metabolism
mpl00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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