KEGG   PATHWAY: mpt03430
Entry
mpt03430                    Pathway                                
Name
Mismatch repair - Methylibium petroleiphilum
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
mpt03430  Mismatch repair
mpt03430

Other DBs
GO: 0006298
Organism
Methylibium petroleiphilum [GN:mpt]
Gene
Mpe_A2842  DNA mismatch repair protein MutS [KO:K03555]
Mpe_A2031  DNA mismatch repair protein MutL [KO:K03572]
Mpe_A1142  ATP-dependent DNA helicase UvrD [KO:K03657] [EC:5.6.2.4]
Mpe_A1360  Exodeoxyribonuclease I subunit C [KO:K01141] [EC:3.1.11.1]
Mpe_A2482  Exodeoxyribonuclease VII large subunit [KO:K03601] [EC:3.1.11.6]
Mpe_A2633  Exodeoxyribonuclease VII small subunit [KO:K03602] [EC:3.1.11.6]
Mpe_A2751  exonuclease RecJ [KO:K07462] [EC:3.1.-.-]
Mpe_A2341  conserved hypothetical protein [KO:K03111]
Mpe_A0111  single-strand binding protein [KO:K03111]
Mpe_B0351  ssb; single-strand binding protein [KO:K03111]
Mpe_A1664  single-strand binding protein [KO:K03111]
Mpe_A2252  DNA polymerase III, alpha subunit [KO:K02337] [EC:2.7.7.7]
Mpe_A0002  DNA polymerase III, beta subunit [KO:K02338] [EC:2.7.7.7]
Mpe_A2534  DNA-directed DNA polymerase [KO:K02343] [EC:2.7.7.7]
Mpe_A0216  DNA polymerase III, delta subunit [KO:K02340] [EC:2.7.7.7]
Mpe_A1859  DNA polymerase III, delta prime subunit [KO:K02341] [EC:2.7.7.7]
Mpe_A0049  DNA-directed DNA polymerase [KO:K02342] [EC:2.7.7.7]
Mpe_A2256  DNA polymerase III, epsilon subunit [KO:K02342] [EC:2.7.7.7]
Mpe_A3347  exonuclease [KO:K02342] [EC:2.7.7.7]
Mpe_A1941  DNA polymerase III, chi subunit [KO:K02339] [EC:2.7.7.7]
Mpe_A1812  DNA ligase (NAD+) [KO:K01972] [EC:6.5.1.2]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
KO pathway
ko03430   
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