KEGG   PATHWAY: mrc00020
Entry
mrc00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Methanoculleus receptaculi
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mrc00020  Citrate cycle (TCA cycle)
mrc00020

Module
mrc_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mrc00020]
Other DBs
GO: 0006099
Organism
Methanoculleus receptaculi [GN:mrc]
Gene
R6Y96_10150  NAD(P)/FAD-dependent oxidoreductase [KO:K00382] [EC:1.8.1.4]
R6Y96_00485  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
R6Y96_04700  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
R6Y96_00490  thiamine pyrophosphate-dependent enzyme [KO:K00175] [EC:1.2.7.3 1.2.7.11]
R6Y96_04705  thiamine pyrophosphate-dependent enzyme [KO:K00175] [EC:1.2.7.3 1.2.7.11]
R6Y96_04710  2-oxoacid:acceptor oxidoreductase family protein [KO:K00177] [EC:1.2.7.3]
R6Y96_04695  ferredoxin family protein [KO:K00176] [EC:1.2.7.3]
R6Y96_04720  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
R6Y96_04715  ATP-grasp domain-containing protein [KO:K01903] [EC:6.2.1.5]
R6Y96_04685  fumarate hydratase [KO:K01677] [EC:4.2.1.2]
R6Y96_04690  FumA C-terminus/TtdB family hydratase beta subunit [KO:K01678] [EC:4.2.1.2]
R6Y96_01755  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
R6Y96_05845  lactate dehydrogenase [KO:K00024] [EC:1.1.1.37]
R6Y96_06070  acetyl-CoA carboxylase biotin carboxylase subunit [KO:K01959] [EC:6.4.1.1]
R6Y96_06075  oadA; sodium-extruding oxaloacetate decarboxylase subunit alpha [KO:K01960] [EC:6.4.1.1]
R6Y96_01400  transketolase C-terminal domain-containing protein [KO:K00169] [EC:1.2.7.1]
R6Y96_09380  transketolase C-terminal domain-containing protein [KO:K00169] [EC:1.2.7.1]
R6Y96_01395  thiamine pyrophosphate-dependent enzyme [KO:K00170] [EC:1.2.7.1]
R6Y96_09385  thiamine pyrophosphate-dependent enzyme [KO:K00170] [EC:1.2.7.1]
R6Y96_09370  pyruvate ferredoxin oxidoreductase subunit gamma [KO:K00172] [EC:1.2.7.1]
R6Y96_01405  2-oxoacid:acceptor oxidoreductase family protein [KO:K00172] [EC:1.2.7.1]
R6Y96_01410  4Fe-4S binding protein [KO:K00171] [EC:1.2.7.1]
R6Y96_09375  4Fe-4S binding protein [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mrc00010  Glycolysis / Gluconeogenesis
mrc00061  Fatty acid biosynthesis
mrc00071  Fatty acid degradation
mrc00190  Oxidative phosphorylation
mrc00220  Arginine biosynthesis
mrc00250  Alanine, aspartate and glutamate metabolism
mrc00280  Valine, leucine and isoleucine degradation
mrc00350  Tyrosine metabolism
mrc00470  D-Amino acid metabolism
mrc00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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