KEGG   PATHWAY: mrtj00020
Entry
mrtj00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Methanospirillum sp. J.3.6.1-F.2.7.3
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mrtj00020  Citrate cycle (TCA cycle)
mrtj00020

Module
mrtj_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mrtj00020]
Other DBs
GO: 0006099
Organism
Methanospirillum sp. J.3.6.1-F.2.7.3 [GN:mrtj]
Gene
KHC33_03440  NAD(P)/FAD-dependent oxidoreductase [KO:K00382] [EC:1.8.1.4]
KHC33_01930  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
KHC33_04635  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
KHC33_01925  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
KHC33_04640  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
KHC33_04645  2-oxoacid:acceptor oxidoreductase family protein [KO:K00177] [EC:1.2.7.3]
KHC33_04630  ferredoxin family protein [KO:K00176] [EC:1.2.7.3]
KHC33_04655  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
KHC33_04650  succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
KHC33_04620  fumarate hydratase [KO:K01677] [EC:4.2.1.2]
KHC33_04625  fumarate hydratase C-terminal domain-containing protein [KO:K01678] [EC:4.2.1.2]
KHC33_08285  lactate dehydrogenase [KO:K00024] [EC:1.1.1.37]
KHC33_15880  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
KHC33_00775  acetyl-CoA carboxylase biotin carboxylase subunit [KO:K01959] [EC:6.4.1.1]
KHC33_00780  pyruvate/oxaloacetate carboxyltransferase [KO:K01960] [EC:6.4.1.1]
KHC33_12310  porA; pyruvate ferredoxin oxidoreductase [KO:K00169] [EC:1.2.7.1]
KHC33_16550  porA; pyruvate ferredoxin oxidoreductase [KO:K00169] [EC:1.2.7.1]
KHC33_12305  pyruvate ferredoxin oxidoreductase [KO:K00170] [EC:1.2.7.1]
KHC33_16545  pyruvate synthase subunit beta [KO:K00170] [EC:1.2.7.1]
KHC33_12320  pyruvate ferredoxin oxidoreductase subunit gamma [KO:K00172] [EC:1.2.7.1]
KHC33_16555  2-oxoacid:acceptor oxidoreductase family protein [KO:K00172] [EC:1.2.7.1]
KHC33_12315  4Fe-4S binding protein [KO:K00171] [EC:1.2.7.1]
KHC33_16560  4Fe-4S binding protein [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mrtj00010  Glycolysis / Gluconeogenesis
mrtj00061  Fatty acid biosynthesis
mrtj00071  Fatty acid degradation
mrtj00190  Oxidative phosphorylation
mrtj00220  Arginine biosynthesis
mrtj00250  Alanine, aspartate and glutamate metabolism
mrtj00280  Valine, leucine and isoleucine degradation
mrtj00350  Tyrosine metabolism
mrtj00470  D-Amino acid metabolism
mrtj00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system