KEGG   PATHWAY: mse00020
Entry
mse00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Metallosphaera sedula DSM 5348
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mse00020  Citrate cycle (TCA cycle)
mse00020

Module
mse_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:mse00020]
mse_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:mse00020]
mse_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mse00020]
mse_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:mse00020]
mse_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mse00020]
Other DBs
GO: 0006099
Organism
Metallosphaera sedula DSM 5348 [GN:mse]
Gene
Msed_1522  citrate synthase [KO:K01647] [EC:2.3.3.1]
Msed_0281  citrate synthase [KO:K01647] [EC:2.3.3.1]
Msed_1467  aconitase [KO:K01681] [EC:4.2.1.3]
Msed_0703  isocitrate dehydrogenase (NADP) [KO:K00031] [EC:1.1.1.42]
Msed_1091  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Msed_1551  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Msed_2009  pyridine nucleotide-disulfide oxidoreductase dimerization region [KO:K00382] [EC:1.8.1.4]
Msed_1971  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Msed_0525  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Msed_0524  pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Msed_1581  succinyl-CoA synthetase (ADP-forming) alpha subunit [KO:K01902] [EC:6.2.1.5]
Msed_1582  succinyl-CoA synthetase (ADP-forming) beta subunit [KO:K01903] [EC:6.2.1.5]
Msed_1217  Acetyl-CoA hydrolase [KO:K18118] [EC:2.8.3.18]
Msed_1114  succinate dehydrogenase subunit A [KO:K00239] [EC:1.3.5.1]
Msed_0677  succinate dehydrogenase subunit A [KO:K00239] [EC:1.3.5.1]
Msed_0676  succinate dehydrogenase subunit B [KO:K00240] [EC:1.3.5.1]
Msed_1113  succinate dehydrogenase subunit C [KO:K00241]
Msed_0675  succinate dehydrogenase subunit C [KO:K00241]
Msed_1112  hypothetical protein [KO:K00242]
Msed_0674  succinate dehydrogenase subunit D [KO:K18859]
Msed_1116  fumarase alpha subunit [KO:K01677] [EC:4.2.1.2]
Msed_1115  hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit [KO:K01678] [EC:4.2.1.2]
Msed_1462  fumarase [KO:K01679] [EC:4.2.1.2]
Msed_0455  malate dehydrogenase (NAD) [KO:K00024] [EC:1.1.1.37]
Msed_1452  Phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
Msed_0509  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00169] [EC:1.2.7.1]
Msed_0308  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00169] [EC:1.2.7.1]
Msed_1200  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00169] [EC:1.2.7.1]
Msed_1199  thiamine pyrophosphate enzyme domain protein TPP-binding protein [KO:K00170] [EC:1.2.7.1]
Msed_0510  thiamine pyrophosphate enzyme domain protein TPP-binding protein [KO:K00170] [EC:1.2.7.1]
Msed_0309  thiamine pyrophosphate enzyme domain protein TPP-binding protein [KO:K00170] [EC:1.2.7.1]
Msed_0507  pyruvate ferredoxin oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
Msed_0306  pyruvate ferredoxin oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
Msed_0508  pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [KO:K00171] [EC:1.2.7.1]
Msed_0307  pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [KO:K00171] [EC:1.2.7.1]
Msed_1201  pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mse00010  Glycolysis / Gluconeogenesis
mse00061  Fatty acid biosynthesis
mse00071  Fatty acid degradation
mse00190  Oxidative phosphorylation
mse00220  Arginine biosynthesis
mse00250  Alanine, aspartate and glutamate metabolism
mse00280  Valine, leucine and isoleucine degradation
mse00350  Tyrosine metabolism
mse00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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