KEGG   PATHWAY: mshe03030
Entry
mshe03030                   Pathway                                
Name
DNA replication - Marinobacter shengliensis
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
mshe03030  DNA replication
mshe03030

Organism
Marinobacter shengliensis [GN:mshe]
Gene
MAALD49_24230  DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
MAALD49_32760  hypothetical protein [KO:K02342] [EC:2.7.7.7]
MAALD49_02240  3'-5' exonuclease [KO:K02342] [EC:2.7.7.7]
MAALD49_19300  dnaQ; DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
MAALD49_24080  dnaE; DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
MAALD49_18500  hypothetical protein [KO:K02343] [EC:2.7.7.7]
MAALD49_18890  holB; DNA polymerase III subunit delta' [KO:K02341] [EC:2.7.7.7]
MAALD49_27230  holA; DNA polymerase III subunit delta [KO:K02340] [EC:2.7.7.7]
MAALD49_23640  holC; DNA polymerase III subunit chi [KO:K02339] [EC:2.7.7.7]
MAALD49_00020  DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
MAALD49_09630  dnaB; replicative DNA helicase [KO:K02314] [EC:5.6.2.3]
MAALD49_06370  hypothetical protein [KO:K02316] [EC:2.7.7.101]
MAALD49_39400  ssb; single-stranded DNA-binding protein [KO:K03111]
MAALD49_07260  ssb; single-stranded DNA-binding protein [KO:K03111]
MAALD49_19290  rnhA; ribonuclease H [KO:K03469] [EC:3.1.26.4]
MAALD49_24840  rnhB; ribonuclease HII [KO:K03470] [EC:3.1.26.4]
MAALD49_06030  polA; DNA polymerase I [KO:K02335] [EC:2.7.7.7]
MAALD49_21700  ligA; DNA ligase [KO:K01972] [EC:6.5.1.2]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   
LinkDB

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