KEGG   PATHWAY: msin00630
Entry
msin00630                   Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Magnolia sinica
Class
Metabolism; Carbohydrate metabolism
Pathway map
msin00630  Glyoxylate and dicarboxylate metabolism
msin00630

Module
msin_M00012  Glyoxylate cycle [PATH:msin00630]
msin_M00532  Photorespiration [PATH:msin00630]
msin_M00621  Glycine cleavage system [PATH:msin00630]
Other DBs
GO: 0046487 0043648
Organism
Magnolia sinica [GN:msin]
Gene
131239171  isocitrate lyase isoform X1 [KO:K01637] [EC:4.1.3.1 4.1.3.30]
131239220  acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal [KO:K01895] [EC:6.2.1.1]
131231100  acetate--CoA ligase CCL3 [KO:K01913] [EC:6.2.1.1 6.2.1.2]
131239960  malate synthase, glyoxysomal-like [KO:K01638] [EC:2.3.3.9]
131246281  malate synthase, glyoxysomal [KO:K01638] [EC:2.3.3.9]
131240374  malate dehydrogenase [KO:K00025] [EC:1.1.1.37]
131233893  malate dehydrogenase-like isoform X1 [KO:K00025] [EC:1.1.1.37]
131245896  malate dehydrogenase, cytoplasmic isoform X1 [KO:K00025] [EC:1.1.1.37]
131218790  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
131250848  malate dehydrogenase, chloroplastic-like [KO:K00026] [EC:1.1.1.37]
131250849  malate dehydrogenase, chloroplastic-like [KO:K00026] [EC:1.1.1.37]
131228598  malate dehydrogenase, glyoxysomal-like isoform X1 [KO:K00026] [EC:1.1.1.37]
131241065  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
131242074  malate dehydrogenase, chloroplastic-like [KO:K00026] [EC:1.1.1.37]
131242075  malate dehydrogenase, chloroplastic-like [KO:K00026] [EC:1.1.1.37]
131245341  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
131218597  malate dehydrogenase, glyoxysomal-like [KO:K00026] [EC:1.1.1.37]
131219475  citrate synthase, mitochondrial-like [KO:K01647] [EC:2.3.3.1]
131222378  citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
131240932  citrate synthase, glyoxysomal-like [KO:K01647] [EC:2.3.3.1]
131245485  citrate synthase, glyoxysomal isoform X1 [KO:K01647] [EC:2.3.3.1]
131237214  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
131226125  aconitate hydratase, cytoplasmic isoform X1 [KO:K01681] [EC:4.2.1.3]
131240291  aconitate hydratase, cytoplasmic-like [KO:K01681] [EC:4.2.1.3]
131255811  acetyl-CoA acetyltransferase 2-like isoform X1 [KO:K00626] [EC:2.3.1.9]
131220707  glycolate oxidase 1 isoform X1 [KO:K11517] [EC:1.1.3.15]
131227523  peroxisomal (S)-2-hydroxyacid oxidase GLO4-like isoform X1 [KO:K11517] [EC:1.1.3.15]
131227778  peroxisomal (S)-2-hydroxyacid oxidase GLO4-like isoform X1 [KO:K11517] [EC:1.1.3.15]
131227779  peroxisomal (S)-2-hydroxyacid oxidase GLO4-like isoform X1 [KO:K11517] [EC:1.1.3.15]
131227781  peroxisomal (S)-2-hydroxyacid oxidase GLO4-like isoform X1 [KO:K11517] [EC:1.1.3.15]
131237023  catalase isozyme 1-like [KO:K03781] [EC:1.11.1.6]
131243309  catalase isozyme 1-like [KO:K03781] [EC:1.11.1.6]
131243310  catalase isozyme 1 [KO:K03781] [EC:1.11.1.6]
131248167  glyoxylate/hydroxypyruvate reductase HPR3-like [KO:K15919] [EC:1.1.1.79 1.1.1.81]
131252670  glyoxylate/hydroxypyruvate reductase HPR3-like [KO:K15919] [EC:1.1.1.79 1.1.1.81]
131254490  glyoxylate/hydroxypyruvate reductase HPR3-like [KO:K15919] [EC:1.1.1.79 1.1.1.81]
131222795  glyoxylate/succinic semialdehyde reductase 2, chloroplastic [KO:K18121] [EC:1.1.1.79 1.1.1.-]
131240297  glyoxylate/succinic semialdehyde reductase 1 [KO:K18121] [EC:1.1.1.79 1.1.1.-]
131237137  glycerate dehydrogenase [KO:K15893] [EC:1.1.1.29]
131240069  phosphoglycolate phosphatase 1A, chloroplastic-like [KO:K19269] [EC:3.1.3.18 3.1.3.48]
131257930  phosphoglycolate phosphatase 2-like isoform X1 [KO:K19269] [EC:3.1.3.18 3.1.3.48]
131239064  ribulose bisphosphate carboxylase large chain [KO:K01601] [EC:4.1.1.39]
18128598  rbcL; ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [KO:K01601] [EC:4.1.1.39]
131235612  ribulose bisphosphate carboxylase small subunit, chloroplastic-like isoform X1 [KO:K01602] [EC:4.1.1.39]
131237664  ribulose bisphosphate carboxylase small subunit, chloroplastic 5-like [KO:K01602] [EC:4.1.1.39]
131256732  ribulose bisphosphate carboxylase small subunit, chloroplastic 3-like [KO:K01602] [EC:4.1.1.39]
131217181  ribulose bisphosphate carboxylase small subunit, chloroplastic 3-like [KO:K01602] [EC:4.1.1.39]
131250782  serine--glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
131237900  glutamate--glyoxylate aminotransferase 2 [KO:K14272] [EC:2.6.1.4 2.6.1.2 2.6.1.44]
131251260  ferredoxin-dependent glutamate synthase, chloroplastic-like [KO:K00284] [EC:1.4.7.1]
131236225  glutamine synthetase nodule isozyme isoform X1 [KO:K01915] [EC:6.3.1.2]
131251558  glutamine synthetase nodule isozyme-like [KO:K01915] [EC:6.3.1.2]
131251559  glutamine synthetase nodule isozyme-like [KO:K01915] [EC:6.3.1.2]
131251567  glutamine synthetase cytosolic isozyme [KO:K01915] [EC:6.3.1.2]
131226144  glutamine synthetase leaf isozyme, chloroplastic [KO:K01915] [EC:6.3.1.2]
131226719  glutamine synthetase cytosolic isozyme 1 [KO:K01915] [EC:6.3.1.2]
131242937  glutamine synthetase nodule isozyme-like [KO:K01915] [EC:6.3.1.2]
131242938  glutamine synthetase cytosolic isozyme-like isoform X1 [KO:K01915] [EC:6.3.1.2]
131222820  serine hydroxymethyltransferase 3, chloroplastic [KO:K00600] [EC:2.1.2.1]
131239621  serine hydroxymethyltransferase 4 [KO:K00600] [EC:2.1.2.1]
131228947  serine hydroxymethyltransferase, mitochondrial [KO:K00600] [EC:2.1.2.1]
131234345  serine hydroxymethyltransferase 7-like [KO:K00600] [EC:2.1.2.1]
131218750  serine hydroxymethyltransferase, mitochondrial-like [KO:K00600] [EC:2.1.2.1]
131246805  serine hydroxymethyltransferase 4-like [KO:K00600] [EC:2.1.2.1]
131222744  glycine dehydrogenase (decarboxylating), mitochondrial-like [KO:K00281] [EC:1.4.4.2]
131218656  glycine dehydrogenase (decarboxylating), mitochondrial [KO:K00281] [EC:1.4.4.2]
131240746  aminomethyltransferase, mitochondrial [KO:K00605] [EC:2.1.2.10]
131224778  dihydrolipoyl dehydrogenase, mitochondrial-like [KO:K00382] [EC:1.8.1.4]
131225910  dihydrolipoyl dehydrogenase 2, chloroplastic-like [KO:K00382] [EC:1.8.1.4]
131230859  dihydrolipoyl dehydrogenase, mitochondrial-like [KO:K00382] [EC:1.8.1.4]
131248160  glycine cleavage system H protein, mitochondrial-like [KO:K02437]
131221015  glycine cleavage system H protein 2, mitochondrial isoform X1 [KO:K02437]
131233208  glycine cleavage system H protein, mitochondrial [KO:K02437]
131223321  D-glycerate 3-kinase, chloroplastic isoform X1 [KO:K15918] [EC:2.7.1.31]
131255209  D-glycerate 3-kinase, chloroplastic-like isoform X1 [KO:K15918] [EC:2.7.1.31]
131235363  formate dehydrogenase, mitochondrial [KO:K00122] [EC:1.17.1.9]
131248256  formyltetrahydrofolate deformylase 2, mitochondrial [KO:K01433] [EC:3.5.1.10]
131218986  uncharacterized protein LOC131218986 isoform X1 [KO:K01455] [EC:3.5.1.49]
131231815  probable CoA ligase CCL9 [KO:K22133] [EC:6.2.1.8]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
msin00010  Glycolysis / Gluconeogenesis
msin00020  Citrate cycle (TCA cycle)
msin00030  Pentose phosphate pathway
msin00053  Ascorbate and aldarate metabolism
msin00071  Fatty acid degradation
msin00230  Purine metabolism
msin00250  Alanine, aspartate and glutamate metabolism
msin00260  Glycine, serine and threonine metabolism
msin00620  Pyruvate metabolism
msin00710  Carbon fixation by Calvin cycle
msin00750  Vitamin B6 metabolism
msin00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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