KEGG   PATHWAY: msub00020
Entry
msub00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Methanobacterium subterraneum
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
msub00020  Citrate cycle (TCA cycle)
msub00020

Module
msub_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:msub00020]
Other DBs
GO: 0006099
Organism
Methanobacterium subterraneum [GN:msub]
Gene
BK009_11515  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
BK009_10670  2-oxoacid:ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
BK009_10875  2-oxoglutarate synthase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
BK009_10675  2-oxoacid ferredoxin oxidoreductase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
BK009_10880  2-oxoglutarate synthase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
BK009_10885  2-oxoglutarate ferredoxin oxidoreductase subunit gamma [KO:K00177] [EC:1.2.7.3]
BK009_10870  ferredoxin [KO:K00176] [EC:1.2.7.3]
BK009_05760  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
BK009_10890  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
BK009_06690  fumarate hydratase [KO:K01677] [EC:4.2.1.2]
BK009_06965  fumarate hydratase [KO:K01677] [EC:4.2.1.2]
BK009_05010  fumarate hydratase [KO:K01678] [EC:4.2.1.2]
BK009_07240  fumarate hydratase [KO:K01678] [EC:4.2.1.2]
BK009_06035  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BK009_04905  acetyl-CoA carboxylase biotin carboxylase subunit [KO:K01959] [EC:6.4.1.1]
BK009_07185  oxaloacetate decarboxylase subunit alpha [KO:K01960] [EC:6.4.1.1]
BK009_06670  porA; pyruvate ferredoxin oxidoreductase [KO:K00169] [EC:1.2.7.1]
BK009_06675  2-ketoisovalerate ferredoxin oxidoreductase [KO:K00170] [EC:1.2.7.1]
BK009_06660  pyruvate ferredoxin oxidoreductase [KO:K00172] [EC:1.2.7.1]
BK009_06665  pyruvate synthase [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
msub00010  Glycolysis / Gluconeogenesis
msub00061  Fatty acid biosynthesis
msub00071  Fatty acid degradation
msub00190  Oxidative phosphorylation
msub00220  Arginine biosynthesis
msub00250  Alanine, aspartate and glutamate metabolism
msub00280  Valine, leucine and isoleucine degradation
msub00350  Tyrosine metabolism
msub00470  D-Amino acid metabolism
msub00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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