KEGG   PATHWAY: mtar00020
Entry
mtar00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Candidatus Moanabacter tarae
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mtar00020  Citrate cycle (TCA cycle)
mtar00020

Module
mtar_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:mtar00020]
mtar_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mtar00020]
mtar_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:mtar00020]
Other DBs
GO: 0006099
Organism
Candidatus Moanabacter tarae [GN:mtar]
Gene
DF168_00578  gltA2; Citrate synthase 1 [KO:K01647] [EC:2.3.3.1]
DF168_00911  acn; Aconitate hydratase A [KO:K01681] [EC:4.2.1.3]
DF168_00879  icd; Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
DF168_01892  Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
DF168_00638  korA_1; 2-oxoglutarate oxidoreductase subunit KorA [KO:K00174] [EC:1.2.7.3 1.2.7.11]
DF168_02088  korA_2; 2-oxoglutarate oxidoreductase subunit KorA [KO:K00174] [EC:1.2.7.3 1.2.7.11]
DF168_00637  korB_1; 2-oxoglutarate oxidoreductase subunit KorB [KO:K00175] [EC:1.2.7.3 1.2.7.11]
DF168_02089  korB_2; 2-oxoglutarate oxidoreductase subunit KorB [KO:K00175] [EC:1.2.7.3 1.2.7.11]
DF168_02255  sucD; Succinate--CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
DF168_02256  sucC; Succinate--CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
DF168_00733  frdA; Fumarate reductase flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
DF168_00734  frdB; Fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
DF168_00735  frdC; Fumarate reductase subunit C [KO:K00246]
DF168_00736  frdD; Fumarate reductase subunit D [KO:K00247]
DF168_01155  fumC; Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
DF168_01226  mdh_2; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
DF168_00873  pckG; Phosphoenolpyruvate carboxykinase [GTP] [KO:K01596] [EC:4.1.1.32]
DF168_00277  pdhC_1; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
DF168_01318  pdhC_2; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mtar00010  Glycolysis / Gluconeogenesis
mtar00053  Ascorbate and aldarate metabolism
mtar00061  Fatty acid biosynthesis
mtar00071  Fatty acid degradation
mtar00190  Oxidative phosphorylation
mtar00220  Arginine biosynthesis
mtar00250  Alanine, aspartate and glutamate metabolism
mtar00280  Valine, leucine and isoleucine degradation
mtar00350  Tyrosine metabolism
mtar00470  D-Amino acid metabolism
mtar00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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