KEGG   PATHWAY: mth00020
Entry
mth00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Methanothermobacter thermautotrophicus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mth00020  Citrate cycle (TCA cycle)
mth00020

Other DBs
GO: 0006099
Organism
Methanothermobacter thermautotrophicus [GN:mth]
Gene
MTH_1726  citrate synthase I [KO:K01647] [EC:2.3.3.1]
MTH_962  citrate synthase I [KO:K01647] [EC:2.3.3.1]
MTH_1648  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
MTH_536  2-oxoacid:ferredoxin oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
MTH_1033  2-oxoglutarate oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
MTH_537  2-oxoacid:ferredoxin oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
MTH_1034  2-oxoglutarate oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
MTH_1035  2-oxoglutarate oxidoreductase, gamma subunit [KO:K00177] [EC:1.2.7.3]
MTH_1032  ferredoxin (putative 2-oxoglutarate oxidoreductase, delat subunit) [KO:K00176] [EC:1.2.7.3]
MTH_563  succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
MTH_1036  succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
MTH_1735  fumarate hydratase, class I [KO:K01677] [EC:4.2.1.2]
MTH_963  fumarate hydratase, class I related protein [KO:K01677] [EC:4.2.1.2]
MTH_1910  fumarate hydratase, class I related protein [KO:K01678] [EC:4.2.1.2]
MTH_1115  fumarate hydratase, class I [KO:K01678] [EC:4.2.1.2]
MTH_188  lactate dehydrogenase [KO:K00024] [EC:1.1.1.37]
MTH_1917  biotin carboxylase [KO:K01959] [EC:6.4.1.1]
MTH_1107  oxaloacetate decarboxylase, alpha subunit [KO:K01960] [EC:6.4.1.1]
MTH_1739  pyruvate oxidoreductase, alpha subunit [KO:K00169] [EC:1.2.7.1]
MTH_1738  pyruvate oxidoreductase, beta subunit [KO:K00170] [EC:1.2.7.1]
MTH_1740  pyruvate oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mth00010  Glycolysis / Gluconeogenesis
mth00071  Fatty acid degradation
mth00190  Oxidative phosphorylation
mth00220  Arginine biosynthesis
mth00250  Alanine, aspartate and glutamate metabolism
mth00280  Valine, leucine and isoleucine degradation
mth00350  Tyrosine metabolism
mth00470  D-Amino acid metabolism
mth00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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