KEGG   PATHWAY: mthm00020
Entry
mthm00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Methanothermobacter sp. THM-1
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mthm00020  Citrate cycle (TCA cycle)
mthm00020

Module
mthm_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mthm00020]
Other DBs
GO: 0006099
Organism
Methanothermobacter sp. THM-1 [GN:mthm]
Gene
FZP57_00845  NAD(P)/FAD-dependent oxidoreductase [KO:K00382] [EC:1.8.1.4]
FZP57_04325  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
FZP57_06785  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
FZP57_06790  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
FZP57_06795  2-oxoacid:ferredoxin oxidoreductase subunit gamma [KO:K00177] [EC:1.2.7.3]
FZP57_06780  ferredoxin family protein [KO:K00176] [EC:1.2.7.3]
FZP57_04450  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
FZP57_06800  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
FZP57_06455  fumarate hydratase [KO:K01677] [EC:4.2.1.2]
FZP57_02095  fumarate hydratase [KO:K01678] [EC:4.2.1.2]
FZP57_07210  fumarate hydratase [KO:K01678] [EC:4.2.1.2]
FZP57_02870  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
FZP57_02130  acetyl-CoA carboxylase biotin carboxylase subunit [KO:K01959] [EC:6.4.1.1]
FZP57_07170  oadA; oxaloacetate decarboxylase subunit alpha [KO:K01960] [EC:6.4.1.1]
FZP57_01280  porA; pyruvate ferredoxin oxidoreductase [KO:K00169] [EC:1.2.7.1]
FZP57_01275  pyruvate synthase subunit beta [KO:K00170] [EC:1.2.7.1]
FZP57_01290  pyruvate ferredoxin oxidoreductase subunit gamma [KO:K00172] [EC:1.2.7.1]
FZP57_01180  4Fe-4S dicluster domain-containing protein [KO:K00171] [EC:1.2.7.1]
FZP57_01285  4Fe-4S dicluster domain-containing protein [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mthm00010  Glycolysis / Gluconeogenesis
mthm00071  Fatty acid degradation
mthm00190  Oxidative phosphorylation
mthm00220  Arginine biosynthesis
mthm00250  Alanine, aspartate and glutamate metabolism
mthm00280  Valine, leucine and isoleucine degradation
mthm00350  Tyrosine metabolism
mthm00470  D-Amino acid metabolism
mthm00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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