KEGG   PATHWAY: mum00630
Entry
mum00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Pseudoduganella umbonata
Class
Metabolism; Carbohydrate metabolism
Pathway map
mum00630  Glyoxylate and dicarboxylate metabolism
mum00630

Module
mum_M00012  Glyoxylate cycle [PATH:mum00630]
mum_M00621  Glycine cleavage system [PATH:mum00630]
Other DBs
GO: 0046487 0043648
Organism
Pseudoduganella umbonata [GN:mum]
Gene
FCL38_08090  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
FCL38_26730  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
FCL38_05255  malate synthase A [KO:K01638] [EC:2.3.3.9]
FCL38_12760  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
FCL38_12725  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
FCL38_12775  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
FCL38_21465  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
FCL38_00830  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
FCL38_05800  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
FCL38_19940  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
FCL38_21470  phbB; acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
FCL38_25230  FAD-binding protein [KO:K00104] [EC:1.1.99.14]
FCL38_02105  FAD-binding protein [KO:K00104] [EC:1.1.99.14]
FCL38_02110  glcE; glycolate oxidase subunit GlcE [KO:K11472] [EC:1.1.99.14]
FCL38_02115  glcF; glycolate oxidase subunit GlcF [KO:K11473] [EC:1.1.99.14]
FCL38_17670  catalase [KO:K03781] [EC:1.11.1.6]
FCL38_12810  catalase [KO:K03781] [EC:1.11.1.6]
FCL38_04120  catalase [KO:K03781] [EC:1.11.1.6]
FCL38_01770  catalase [KO:K03781] [EC:1.11.1.6]
FCL38_15275  catalase [KO:K03781] [EC:1.11.1.6]
FCL38_20145  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
FCL38_02655  D-2-hydroxyacid dehydrogenase [KO:K00018] [EC:1.1.1.29]
FCL38_18430  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
FCL38_14295  HAD-IIIA family hydrolase [KO:K01091] [EC:3.1.3.18]
FCL38_24285  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
FCL38_20785  alanine--glyoxylate aminotransferase family protein [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
FCL38_17690  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
FCL38_28980  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
FCL38_08885  gcvP; aminomethyl-transferring glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
FCL38_08875  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
FCL38_12680  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
FCL38_14805  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
FCL38_19690  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
FCL38_08880  gcvH; glycine cleavage system protein GcvH [KO:K02437]
FCL38_07520  gcl; glyoxylate carboligase [KO:K01608] [EC:4.1.1.47]
FCL38_07515  hyi; hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
FCL38_29500  hyi; hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
FCL38_30285  TIM barrel protein [KO:K01816] [EC:5.3.1.22]
FCL38_07510  glxR; 2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
FCL38_23870  2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
FCL38_18685  NAD(P)-dependent oxidoreductase [KO:K00042] [EC:1.1.1.60]
FCL38_07290  glycerate kinase [KO:K11529] [EC:2.7.1.165]
FCL38_07505  glycerate kinase [KO:K11529] [EC:2.7.1.165]
FCL38_23865  glycerate kinase [KO:K11529] [EC:2.7.1.165]
FCL38_21960  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
FCL38_07280  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
FCL38_13855  eda; bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
FCL38_23295  formate dehydrogenase [KO:K00126] [EC:1.17.1.9]
FCL38_03305  fdnG; formate dehydrogenase-N subunit alpha [KO:K00123] [EC:1.17.1.9]
FCL38_23300  formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
FCL38_03300  fdxH; formate dehydrogenase subunit beta [KO:K00124]
FCL38_23305  formate dehydrogenase [KO:K00124]
FCL38_03295  formate dehydrogenase subunit gamma [KO:K00127]
FCL38_23310  formate dehydrogenase [KO:K00127]
FCL38_29695  alpha/beta hydrolase [KO:K01432] [EC:3.5.1.9]
FCL38_29760  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
FCL38_16990  hutG; N-formylglutamate deformylase [KO:K01458] [EC:3.5.1.68]
FCL38_23360  oxalyl-CoA decarboxylase [KO:K01577] [EC:4.1.1.8]
FCL38_23365  frc; formyl-CoA transferase [KO:K07749] [EC:2.8.3.16]
FCL38_23320  frc; formyl-CoA transferase [KO:K07749] [EC:2.8.3.16]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
mum00010  Glycolysis / Gluconeogenesis
mum00020  Citrate cycle (TCA cycle)
mum00030  Pentose phosphate pathway
mum00053  Ascorbate and aldarate metabolism
mum00071  Fatty acid degradation
mum00230  Purine metabolism
mum00250  Alanine, aspartate and glutamate metabolism
mum00260  Glycine, serine and threonine metabolism
mum00620  Pyruvate metabolism
mum00710  Carbon fixation by Calvin cycle
mum00750  Vitamin B6 metabolism
mum00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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