KEGG   PATHWAY: mwo00020
Entry
mwo00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Methanothermobacter wolfeii
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mwo00020  Citrate cycle (TCA cycle)
mwo00020

Module
mwo_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mwo00020]
Other DBs
GO: 0006099
Organism
Methanothermobacter wolfeii [GN:mwo]
Gene
MWSIV6_0191  dldH; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
MWSIV6_1419  korA3; 2-oxoglutarate synthase subunit KorA [KO:K00174] [EC:1.2.7.3 1.2.7.11]
MWSIV6_0901  korA1; 2-oxoglutarate synthase subunit KorA [KO:K00174] [EC:1.2.7.3 1.2.7.11]
MWSIV6_1420  korB3; 2-oxoglutarate synthase subunit KorB [KO:K00175] [EC:1.2.7.3 1.2.7.11]
MWSIV6_0902  korB1; 2-oxoglutarate oxidoreductase subunit KorB [KO:K00175] [EC:1.2.7.3 1.2.7.11]
MWSIV6_1421  korC; 2-oxoglutarate synthase subunit KorC [KO:K00177] [EC:1.2.7.3]
MWSIV6_1418  putative ferredoxin MJ0146 [KO:K00176] [EC:1.2.7.3]
MWSIV6_0927  sucD; Succinyl-CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
MWSIV6_1422  sucC; Succinyl-CoA ligase [ADP-forming] subunit beta {ECO:0000255 [KO:K01903] [EC:6.2.1.5]
MWSIV6_1353  Fumarate hydratase, class I related protein {ECO:0000313 [KO:K01677] [EC:4.2.1.2]
MWSIV6_0275  putative L(+)-tartrate dehydratase subunit alpha {ECO:0000250 [KO:K01677] [EC:4.2.1.2]
MWSIV6_1507  Fumarate hydratase {ECO:0000313 [KO:K01678] [EC:4.2.1.2]
MWSIV6_0445  putative L(+)-tartrate dehydratase subunit beta {ECO:0000250 [KO:K01678] [EC:4.2.1.2]
MWSIV6_0603  mdh; Malate dehydrogenase {ECO:0000255 [KO:K00024] [EC:1.1.1.37]
MWSIV6_0452  pycA; Pyruvate carboxylase subunit A [KO:K01959] [EC:6.4.1.1]
MWSIV6_1499  pycB; Pyruvate carboxylase subunit B [KO:K01960] [EC:6.4.1.1]
MWSIV6_0279  porA; Pyruvate synthase subunit PorA [KO:K00169] [EC:1.2.7.1]
MWSIV6_0278  porB; Pyruvate synthase subunit PorB [KO:K00170] [EC:1.2.7.1]
MWSIV6_0281  porC; Pyruvate synthase subunit PorC [KO:K00172] [EC:1.2.7.1]
MWSIV6_0280  porD; Pyruvate synthase subunit PorD [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mwo00010  Glycolysis / Gluconeogenesis
mwo00071  Fatty acid degradation
mwo00190  Oxidative phosphorylation
mwo00220  Arginine biosynthesis
mwo00250  Alanine, aspartate and glutamate metabolism
mwo00280  Valine, leucine and isoleucine degradation
mwo00350  Tyrosine metabolism
mwo00470  D-Amino acid metabolism
mwo00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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