KEGG   PATHWAY: nag00020
Entry
nag00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Natrarchaeobaculum sulfurireducens AArc-Mg
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
nag00020  Citrate cycle (TCA cycle)
nag00020

Module
nag_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:nag00020]
nag_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:nag00020]
nag_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:nag00020]
nag_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:nag00020]
nag_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:nag00020]
Other DBs
GO: 0006099
Organism
Natrarchaeobaculum sulfurireducens AArc-Mg [GN:nag]
Gene
AArcMg_2950  Citrate synthase (si) [KO:K01647] [EC:2.3.3.1]
AArcMg_2929  Aconitate hydratase [KO:K01681] [EC:4.2.1.3]
AArcMg_1683  Aconitate hydratase [KO:K01681] [EC:4.2.1.3]
AArcMg_3181  Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
AArcMg_3442  Dihydrolipoamide dehydrogenase of branched-chainalpha-keto acid dehydrogenase [KO:K00382] [EC:1.8.1.4]
AArcMg_2035  2-oxoglutarate oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
AArcMg_2036  2-oxoglutarate oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
AArcMg_2449  Succinyl-CoA ligase [ADP-forming] alpha chain [KO:K01902] [EC:6.2.1.5]
AArcMg_2450  Succinyl-CoA ligase [ADP-forming] beta chain [KO:K01903] [EC:6.2.1.5]
AArcMg_3361  Succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
AArcMg_1333  Succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
AArcMg_1343  Succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
AArcMg_1342  Succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
AArcMg_1340  Succinate dehydrogenase cytochrome b subunit [KO:K00241]
AArcMg_1341  Succinate dehydrogenase hydrophobic membrane anchor protein [KO:K00242]
AArcMg_1904  Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
AArcMg_0044  Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
AArcMg_1831  Phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
AArcMg_2739  Pyruvate dehydrogenase E1 component alpha subunit [KO:K00161] [EC:1.2.4.1]
AArcMg_3445  Acetoin dehydrogenase E1 component alpha-subunit [KO:K00161] [EC:1.2.4.1]
AArcMg_3444  Acetoin dehydrogenase E1 component beta-subunit [KO:K00162] [EC:1.2.4.1]
AArcMg_3443  Dihydrolipoamide acetyltransferase component (E2) of acetoin dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
AArcMg_1570  2-oxoglutarate oxidoreductase, alpha subunit [KO:K00169] [EC:1.2.7.1]
AArcMg_1571  2-oxoglutarate oxidoreductase, beta subunit [KO:K00170] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
nag00010  Glycolysis / Gluconeogenesis
nag00053  Ascorbate and aldarate metabolism
nag00061  Fatty acid biosynthesis
nag00071  Fatty acid degradation
nag00190  Oxidative phosphorylation
nag00220  Arginine biosynthesis
nag00250  Alanine, aspartate and glutamate metabolism
nag00280  Valine, leucine and isoleucine degradation
nag00350  Tyrosine metabolism
nag00470  D-Amino acid metabolism
nag00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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