KEGG   PATHWAY: naj00020
Entry
naj00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Natrarchaeobaculum aegyptiacum
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
naj00020  Citrate cycle (TCA cycle)
naj00020

Module
naj_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:naj00020]
naj_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:naj00020]
naj_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:naj00020]
naj_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:naj00020]
naj_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:naj00020]
naj_M00740  Methylaspartate cycle [PATH:naj00020]
Other DBs
GO: 0006099
Organism
Natrarchaeobaculum aegyptiacum [GN:naj]
Gene
B1756_13090  citrate synthase [KO:K01647] [EC:2.3.3.1]
B1756_13370  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
B1756_18150  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
B1756_14680  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
B1756_09250  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
B1756_15615  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
B1756_01690  oxoglutarate--ferredoxin oxidoreductase [KO:K00174] [EC:1.2.7.3 1.2.7.11]
B1756_01685  2-oxoacid ferredoxin oxidoreductase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
B1756_14790  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
B1756_14795  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
B1756_02980  succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
B1756_02975  succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
B1756_02965  succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
B1756_02970  succinate dehydrogenase [KO:K00242]
B1756_18805  aspA; aspartate ammonia-lyase [KO:K01679] [EC:4.2.1.2]
B1756_08360  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
B1756_16585  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
B1756_14110  pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
B1756_09235  pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
B1756_15605  pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
B1756_15610  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
B1756_09240  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
B1756_15620  branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
B1756_09245  branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
B1756_17480  2-ketoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00169] [EC:1.2.7.1]
B1756_17475  2-ketoglutarate ferredoxin oxidoreductase subunit beta [KO:K00170] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
naj00010  Glycolysis / Gluconeogenesis
naj00053  Ascorbate and aldarate metabolism
naj00061  Fatty acid biosynthesis
naj00071  Fatty acid degradation
naj00190  Oxidative phosphorylation
naj00220  Arginine biosynthesis
naj00250  Alanine, aspartate and glutamate metabolism
naj00280  Valine, leucine and isoleucine degradation
naj00350  Tyrosine metabolism
naj00470  D-Amino acid metabolism
naj00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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