KEGG   PATHWAY: nar00630
Entry
nar00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Novosphingobium aromaticivorans
Class
Metabolism; Carbohydrate metabolism
Pathway map
nar00630  Glyoxylate and dicarboxylate metabolism
nar00630

Module
nar_M00012  Glyoxylate cycle [PATH:nar00630]
nar_M00621  Glycine cleavage system [PATH:nar00630]
nar_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:nar00630]
Other DBs
GO: 0046487 0043648
Organism
Novosphingobium aromaticivorans [GN:nar]
Gene
Saro_1029  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
Saro_2625  acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
Saro_0885  Malate synthase G [KO:K01638] [EC:2.3.3.9]
Saro_1182  malate dehydrogenase (NAD) [KO:K00024] [EC:1.1.1.37]
Saro_2032  citrate synthase [KO:K01647] [EC:2.3.3.1]
Saro_0425  aconitase [KO:K01681] [EC:4.2.1.3]
Saro_2306  Acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
Saro_2349  Acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
Saro_2502  conserved hypothetical protein [KO:K00626] [EC:2.3.1.9]
Saro_0809  Acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
Saro_1069  Acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
Saro_1222  Acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
Saro_3766  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
Saro_3758  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
Saro_0867  Acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
Saro_3212  3-oxoacyl-[acyl-carrier-protein] reductase [KO:K00023] [EC:1.1.1.36]
Saro_0810  methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
Saro_3795  acyl-CoA dehydrogenase domain protein [KO:K14448] [EC:1.3.8.12]
Saro_0815  biotin carboxyl carrier protein / biotin carboxylase [KO:K01965] [EC:6.4.1.3]
Saro_0808  propionyl-CoA carboxylase carboxyltransferase subunit [KO:K01966] [EC:6.4.1.3 2.1.3.15]
Saro_0811  methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
Saro_3563  Catalase domain protein [KO:K03781] [EC:1.11.1.6]
Saro_2308  Glycolate reductase [KO:K00015] [EC:1.1.1.26]
Saro_2948  D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding protein [KO:K12972] [EC:1.1.1.79 1.1.1.81]
Saro_1198  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
Saro_2839  HAD-superfamily hydrolase, subfamily IA, variant 1 [KO:K01091] [EC:3.1.3.18]
Saro_1108  L-glutamine synthetase [KO:K01915] [EC:6.3.1.2]
Saro_2609  Glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
Saro_2240  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
Saro_1852  glycine dehydrogenase (decarboxylating) alpha subunit [KO:K00282] [EC:1.4.4.2]
Saro_1853  glycine dehydrogenase (decarboxylating) beta subunit [KO:K00283] [EC:1.4.4.2]
Saro_1850  aminomethyltransferase [KO:K00605] [EC:2.1.2.10]
Saro_1178  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Saro_1945  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Saro_1851  glycine cleavage system H protein [KO:K02437]
Saro_3564  Xylose isomerase domain protein TIM barrel [KO:K01816] [EC:5.3.1.22]
Saro_3575  Xylose isomerase domain protein TIM barrel [KO:K01816] [EC:5.3.1.22]
Saro_3775  MOFRL domain protein [KO:K11529] [EC:2.7.1.165]
Saro_2935  Tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
Saro_3895  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
Saro_2568  2-keto-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
Saro_0736  hypothetical protein [KO:K00126] [EC:1.17.1.9]
Saro_0735  formate dehydrogenase alpha subunit [KO:K00123] [EC:1.17.1.9]
Saro_0733  formate dehydrogenase beta subunit [KO:K00124]
Saro_0732  formate dehydrogenase gamma subunit [KO:K00127]
Saro_2682  Esterase/lipase/thioesterase [KO:K01432] [EC:3.5.1.9]
Saro_2862  formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
nar00010  Glycolysis / Gluconeogenesis
nar00020  Citrate cycle (TCA cycle)
nar00030  Pentose phosphate pathway
nar00053  Ascorbate and aldarate metabolism
nar00071  Fatty acid degradation
nar00230  Purine metabolism
nar00250  Alanine, aspartate and glutamate metabolism
nar00260  Glycine, serine and threonine metabolism
nar00620  Pyruvate metabolism
nar00710  Carbon fixation by Calvin cycle
nar00750  Vitamin B6 metabolism
nar00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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