KEGG   PATHWAY: ncr03008
Entry
ncr03008                    Pathway                                
Name
Ribosome biogenesis in eukaryotes - Neurospora crassa
Description
Ribosomes are the cellular factories responsible for making proteins. In eukaryotes, ribosome biogenesis involves the production and correct assembly of four rRNAs and about 80 ribosomal proteins. It requires hundreds of factors not present in the mature particle. In the absence of these proteins, ribosome biogenesis is stalled and cell growth is terminated even under optimal growth conditions. The primary pre-rRNA transcript is assembled into the 90S pre-ribosome, which contains both 40S and 60S assembly factors. Within this complex, the pre-rRNA is cleaved. pre-60S ribosomes are subjected to several sequential processing steps in the nucleoplasm involving numerous assembly intermediates before it is exported to the cytoplasm and matured into the 60S ribosomal subunit. The pre-40S ribosome is matured to the small ribosomal subunit in the cytoplasm by cleavage.
Class
Genetic Information Processing; Translation
Pathway map
ncr03008  Ribosome biogenesis in eukaryotes
ncr03008

Organism
Neurospora crassa [GN:ncr]
Gene
NCU02754  ckb-2; casein kinase II subunit beta-2 [KO:K03115]
NCU05485  ckb-1; casein kinase II regulatory beta subunit-1 [KO:K03115]
NCU03124  cka; casein kinase II subunit alpha [KO:K03097] [EC:2.7.11.1]
NCU09437  hypothetical protein [KO:K14544]
NCU04571  hypothetical protein [KO:K14545]
NCU08421  hypothetical protein [KO:K14546]
NCU00650  Wdr1p [KO:K14548]
NCU09843  WD repeat containing protein 57 [KO:K14549]
NCU00336  U3 small nucleolar RNA-associated protein 10 [KO:K14550]
NCU02604  hypothetical protein [KO:K14552]
NCU03018  small nucleolar ribonucleoprotein complex subunit [KO:K14553]
NCU07011  WD repeat containing protein 36 [KO:K14554]
NCU03628  pod-5; polarity defective-5 [KO:K14555]
NCU03051  WD domain-containing protein [KO:K14556]
NCU05894  hypothetical protein [KO:K14557]
NCU03794  periodic tryptophan protein 2 [KO:K14558]
NCU03952  U3 small nucleolar ribonucleoprotein Mpp10 [KO:K14559]
NCU01008  U3 small nucleolar ribonucleoprotein IMP3 [KO:K14560]
NCU04243  U3 small nucleolar ribonucleoprotein IMP4 [KO:K14561]
NCU03702  rRNA 2'-O-methyltransferase fibrillarin [KO:K14563] [EC:2.1.1.-]
NCU06943  SIK1 [KO:K14564]
NCU03396  nucleolar protein nop-58 [KO:K14565]
NCU01331  snRNP and snoRNP protein [KO:K12845]
NCU01290  centromere/microtubule-binding protein CBF5 [KO:K11131] [EC:5.4.99.-]
NCU08951  H/ACA ribonucleoprotein complex subunit 2 [KO:K11129]
NCU16757  H/ACA ribonucleoprotein complex subunit 1 [KO:K11128]
NCU08903  Nop10 family nucleolar RNA-binding protein [KO:K11130]
NCU04159  DUF652 domain-containing protein [KO:K14566]
NCU07058  small nucleolar ribonucleoprotein complex subunit Utp14 [KO:K14567]
NCU01762  nucleolar RNAse III [KO:K03685] [EC:3.1.26.3]
NCU02428  nucleolar essential protein 1 [KO:K14568] [EC:2.1.1.260]
NCU04348  ribosome biogenesis protein [KO:K14569]
NCU02284  nucleolar ATPase Kre33 [KO:K14521] [EC:2.3.1.-]
NCU02675  RNA-3'-phosphate cyclase [KO:K11108]
NCU00690  ribonuclease P complex subunit Pop1 [KO:K01164] [EC:3.1.26.5]
NCU00319  hypothetical protein [KO:K14522] [EC:3.1.26.5]
NCU08660  hypothetical protein [KO:K03538] [EC:3.1.26.5]
NCU16771  Rpp14 family protein [KO:K03537] [EC:3.1.26.5]
NCU10622  hypothetical protein [KO:K14526] [EC:3.1.26.5]
NCU01434  hypothetical protein [KO:K14528] [EC:3.1.26.5]
NCU08368  ribonuclease P complex subunit Pop2 [KO:K03539] [EC:3.1.26.5]
NCU04408  hypothetical protein [KO:K14530] [EC:3.1.26.5]
NCU02961  exonuclease [KO:K14570] [EC:3.1.-.-]
NCU08945  RNA exonuclease 3 [KO:K14570] [EC:3.1.-.-]
NCU16377  oligoribonuclease [KO:K13288] [EC:3.1.-.-]
NCU06678  exonuclease Kem1 [KO:K12618] [EC:3.1.13.-]
NCU01643  5'-3' exoribonuclease 2 [KO:K12619] [EC:3.1.13.-]
NCU05289  nucleolar GTP-binding protein 1 [KO:K06943]
NCU02546  nucleolar GTP-binding protein 2 [KO:K14537]
NCU03066  GTP-binding protein [KO:K14538]
NCU01809  AAA family ATPase/60S ribosome export protein Rix7 [KO:K14571]
NCU06468  midasin [KO:K14572]
NCU06217  nucleolar protein 4 [KO:K14573]
NCU08904  20S-pre-rRNA D-site endonuclease NOB1 [KO:K11883]
NCU00685  ck-1a; casein kinase I isoform delta [KO:K14758] [EC:2.7.11.1]
NCU09269  ran; ran-like [KO:K07936]
NCU01820  exportin-1 [KO:K14290]
NCU08663  nonsense-mediated mRNA decay protein 3 [KO:K07562]
NCU09317  hypothetical protein [KO:K14284]
NCU03631  hypothetical protein [KO:K14285]
NCU09004  eukaryotic translation initiation factor 6 [KO:K03264]
NCU00476  UPF0023 family protein [KO:K14574]
NCU06278  elongation factor 2 [KO:K14536] [EC:3.6.5.-]
NCU04166  nucleolar GTP-binding protein 2 [KO:K14539] [EC:3.6.1.-]
NCU06393  hypothetical protein [KO:K14575]
NCU10220  POS9-activating factor FAP7 [KO:K18532] [EC:2.7.4.3]
NCU08767  stk-52; serine/threonine protein kinase-52 [KO:K07178] [EC:2.7.11.1]
NCU07722  rbg-40; ribosome biogenesis-40 [KO:K07179] [EC:2.7.11.1]
NCU15753  18S ribosomal RNA [KO:K01979]
NCU15764  18S ribosomal RNA [KO:K01979]
NCU17362  18S ribosomal RNA [KO:K01979]
NCU15770  18S ribosomal RNA [KO:K01979]
NCU15773  18S ribosomal RNA [KO:K01979]
NCU15776  18S ribosomal RNA [KO:K01979]
NCU15779  18S ribosomal RNA [KO:K01979]
NCU15782  18S ribosomal RNA [KO:K01979]
NCU15788  18S ribosomal RNA [KO:K01979]
NCU15820  18S ribosomal RNA [KO:K01979]
NCU15690  18S ribosomal RNA [KO:K01979]
NCU15696  18S ribosomal RNA [KO:K01979]
NCU15699  18S ribosomal RNA [KO:K01979]
NCU15702  18S ribosomal RNA [KO:K01979]
NCU15704  18S ribosomal RNA [KO:K01979]
NCU15707  18S ribosomal RNA [KO:K01979]
NCU15710  18S ribosomal RNA [KO:K01979]
NCU15726  18S ribosomal RNA [KO:K01979]
NCU15713  18S ribosomal RNA [KO:K01979]
NCU15757  18S ribosomal RNA [KO:K01979]
NCU15716  18S ribosomal RNA [KO:K01979]
NCU15732  18S ribosomal RNA [KO:K01979]
NCU15761  18S ribosomal RNA [KO:K01979]
NCU15791  18S ribosomal RNA [KO:K01979]
NCU15793  18S ribosomal RNA [KO:K01979]
NCU15796  18S ribosomal RNA [KO:K01979]
NCU15799  18S ribosomal RNA [KO:K01979]
NCU15802  18S ribosomal RNA [KO:K01979]
NCU15805  18S ribosomal RNA [KO:K01979]
NCU15810  18S ribosomal RNA [KO:K01979]
NCU15610  18S ribosomal RNA [KO:K01979]
NCU15729  18S ribosomal RNA [KO:K01979]
NCU15739  18S ribosomal RNA [KO:K01979]
NCU15741  18S ribosomal RNA [KO:K01979]
NCU15744  18S ribosomal RNA [KO:K01979]
NCU15746  18S ribosomal RNA [KO:K01979]
NCU15750  18S ribosomal RNA [KO:K01979]
NCU15719  18S ribosomal RNA [KO:K01979]
NCU15693  18S ribosomal RNA [KO:K01979]
NCU15785  18S ribosomal RNA [KO:K01979]
NCU17409  18S ribosomal RNA [KO:K01979]
NCU15825  18S ribosomal RNA [KO:K01979]
NCU15611  5.8S ribosomal RNA [KO:K01986]
NCU17327  5.8S ribosomal RNA [KO:K01986]
NCU17360  5.8S ribosomal RNA [KO:K01986]
NCU17363  5.8S ribosomal RNA [KO:K01986]
NCU15771  5.8S ribosomal RNA [KO:K01986]
NCU17369  5.8S ribosomal RNA [KO:K01986]
NCU17372  5.8S ribosomal RNA [KO:K01986]
NCU15780  5.8S ribosomal RNA [KO:K01986]
NCU17381  5.8S ribosomal RNA [KO:K01986]
NCU17384  5.8S ribosomal RNA [KO:K01986]
NCU17387  5.8S ribosomal RNA [KO:K01986]
NCU17390  5.8S ribosomal RNA [KO:K01986]
NCU17399  5.8S ribosomal RNA [KO:K01986]
NCU15691  5.8S ribosomal RNA [KO:K01986]
NCU17393  5.8S ribosomal RNA [KO:K01986]
NCU17396  5.8S ribosomal RNA [KO:K01986]
NCU17402  5.8S ribosomal RNA [KO:K01986]
NCU17405  5.8S ribosomal RNA [KO:K01986]
NCU15694  5.8S ribosomal RNA [KO:K01986]
NCU15762  5.8S ribosomal RNA [KO:K01986]
NCU17294  5.8S ribosomal RNA [KO:K01986]
NCU17303  5.8S ribosomal RNA [KO:K01986]
NCU17306  5.8S ribosomal RNA [KO:K01986]
NCU15711  5.8S ribosomal RNA [KO:K01986]
NCU17312  5.8S ribosomal RNA [KO:K01986]
NCU15717  5.8S ribosomal RNA [KO:K01986]
NCU17321  5.8S ribosomal RNA [KO:K01986]
NCU15730  5.8S ribosomal RNA [KO:K01986]
NCU15737  5.8S ribosomal RNA [KO:K01986]
NCU17334  5.8S ribosomal RNA [KO:K01986]
NCU17337  5.8S ribosomal RNA [KO:K01986]
NCU17342  5.8S ribosomal RNA [KO:K01986]
NCU17346  5.8S ribosomal RNA [KO:K01986]
NCU17349  5.8S ribosomal RNA [KO:K01986]
NCU17353  5.8S ribosomal RNA [KO:K01986]
NCU17297  5.8S ribosomal RNA [KO:K01986]
NCU17300  5.8S ribosomal RNA [KO:K01986]
NCU17378  5.8S ribosomal RNA [KO:K01986]
NCU17318  5.8S ribosomal RNA [KO:K01986]
NCU17408  5.8S ribosomal RNA [KO:K01986]
NCU15816  5.8S ribosomal RNA [KO:K01986]
NCU15821  5.8S ribosomal RNA [KO:K01986]
NCU15826  5.8S ribosomal RNA [KO:K01986]
NCU15814  28S ribosomal RNA [KO:K01982]
NCU15743  28S ribosomal RNA [KO:K01982]
NCU15752  28S ribosomal RNA [KO:K01982]
NCU15769  28S ribosomal RNA [KO:K01982]
NCU15775  28S ribosomal RNA [KO:K01982]
NCU15778  28S ribosomal RNA [KO:K01982]
NCU15781  28S ribosomal RNA [KO:K01982]
NCU15790  28S ribosomal RNA [KO:K01982]
NCU15792  28S ribosomal RNA [KO:K01982]
NCU15795  28S ribosomal RNA [KO:K01982]
NCU15817  28S ribosomal RNA [KO:K01982]
NCU15819  28S ribosomal RNA [KO:K01982]
NCU17319  28S ribosomal RNA [KO:K01982]
NCU15612  28S ribosomal RNA [KO:K01982]
NCU15692  28S ribosomal RNA [KO:K01982]
NCU15695  28S ribosomal RNA [KO:K01982]
NCU15701  28S ribosomal RNA [KO:K01982]
NCU15709  28S ribosomal RNA [KO:K01982]
NCU15798  28S ribosomal RNA [KO:K01982]
NCU15801  28S ribosomal RNA [KO:K01982]
NCU15804  28S ribosomal RNA [KO:K01982]
NCU15808  28S ribosomal RNA [KO:K01982]
NCU15759  28S ribosomal RNA [KO:K01982]
NCU15698  28S ribosomal RNA [KO:K01982]
NCU15703  28S ribosomal RNA [KO:K01982]
NCU15706  28S ribosomal RNA [KO:K01982]
NCU15811  28S ribosomal RNA [KO:K01982]
NCU15772  28S ribosomal RNA [KO:K01982]
NCU15766  28S ribosomal RNA [KO:K01982]
NCU15760  28S ribosomal RNA [KO:K01982]
NCU15712  28S ribosomal RNA [KO:K01982]
NCU15715  28S ribosomal RNA [KO:K01982]
NCU15718  28S ribosomal RNA [KO:K01982]
NCU17322  28S ribosomal RNA [KO:K01982]
NCU15731  28S ribosomal RNA [KO:K01982]
NCU15734  28S ribosomal RNA [KO:K01982]
NCU15738  28S ribosomal RNA [KO:K01982]
NCU15740  28S ribosomal RNA [KO:K01982]
NCU15745  28S ribosomal RNA [KO:K01982]
NCU15787  28S ribosomal RNA [KO:K01982]
NCU15763  28S ribosomal RNA [KO:K01982]
NCU15784  28S ribosomal RNA [KO:K01982]
NCU15615  5S ribosomal RNA [KO:K01981]
NCU15605  5S ribosomal RNA [KO:K01981]
NCU15604  5S ribosomal RNA [KO:K01981]
NCU15639  5S ribosomal RNA [KO:K01981]
NCU15674  5S ribosomal RNA [KO:K01981]
NCU15656  5S ribosomal RNA [KO:K01981]
NCU15638  5S ribosomal RNA [KO:K01981]
NCU15613  5S ribosomal RNA [KO:K01981]
NCU15646  5S ribosomal RNA [KO:K01981]
NCU15655  5S ribosomal RNA [KO:K01981]
NCU15684  5S ribosomal RNA [KO:K01981]
NCU15665  5S ribosomal RNA [KO:K01981]
NCU15688  5S ribosomal RNA [KO:K01981]
NCU15641  5S ribosomal RNA [KO:K01981]
NCU15676  5S ribosomal RNA [KO:K01981]
NCU15675  5S ribosomal RNA [KO:K01981]
NCU15687  5S ribosomal RNA [KO:K01981]
NCU15617  5S ribosomal RNA [KO:K01981]
NCU15645  5S ribosomal RNA [KO:K01981]
NCU15680  5S ribosomal RNA [KO:K01981]
NCU15668  5S ribosomal RNA [KO:K01981]
NCU15653  5S ribosomal RNA [KO:K01981]
NCU15672  5S ribosomal RNA [KO:K01981]
NCU15621  5S ribosomal RNA [KO:K01981]
NCU15669  5S ribosomal RNA [KO:K01981]
NCU15626  5S ribosomal RNA [KO:K01981]
NCU15659  5S ribosomal RNA [KO:K01981]
NCU15632  5S ribosomal RNA [KO:K01981]
NCU15657  5S ribosomal RNA [KO:K01981]
NCU15607  5S ribosomal RNA [KO:K01981]
NCU15631  5S ribosomal RNA [KO:K01981]
NCU15654  5S ribosomal RNA [KO:K01981]
NCU15681  5S ribosomal RNA [KO:K01981]
NCU15682  5S ribosomal RNA [KO:K01981]
NCU15620  5S ribosomal RNA [KO:K01981]
NCU15618  5S ribosomal RNA [KO:K01981]
NCU15650  5S ribosomal RNA [KO:K01981]
NCU15640  5S ribosomal RNA [KO:K01981]
NCU15679  5S ribosomal RNA [KO:K01981]
NCU15637  5S ribosomal RNA [KO:K01981]
NCU15660  5S ribosomal RNA [KO:K01981]
NCU15667  5S ribosomal RNA [KO:K01981]
NCU15651  5S ribosomal RNA [KO:K01981]
NCU15616  5S ribosomal RNA [KO:K01981]
NCU15619  5S ribosomal RNA [KO:K01981]
NCU15664  5S ribosomal RNA [KO:K01981]
NCU15649  5S ribosomal RNA [KO:K01981]
NCU15652  5S ribosomal RNA [KO:K01981]
NCU15643  5S ribosomal RNA [KO:K01981]
NCU15642  5S ribosomal RNA [KO:K01981]
NCU15661  5S ribosomal RNA [KO:K01981]
NCU15685  5S ribosomal RNA [KO:K01981]
NCU15677  5S ribosomal RNA [KO:K01981]
NCU15644  5S ribosomal RNA [KO:K01981]
NCU15627  5S ribosomal RNA [KO:K01981]
NCU15647  5S ribosomal RNA [KO:K01981]
NCU15608  5S ribosomal RNA [KO:K01981]
NCU15624  5S ribosomal RNA [KO:K01981]
NCU15662  5S ribosomal RNA [KO:K01981]
NCU15614  5S ribosomal RNA [KO:K01981]
NCU15623  5S ribosomal RNA [KO:K01981]
NCU15663  5S ribosomal RNA [KO:K01981]
NCU15636  5S ribosomal RNA [KO:K01981]
NCU15634  5S ribosomal RNA [KO:K01981]
NCU15633  5S ribosomal RNA [KO:K01981]
NCU15678  5S ribosomal RNA [KO:K01981]
NCU15630  5S ribosomal RNA [KO:K01981]
NCU15622  5S ribosomal RNA [KO:K01981]
NCU15625  5S ribosomal RNA [KO:K01981]
NCU15648  5S ribosomal RNA [KO:K01981]
NCU15606  5S ribosomal RNA [KO:K01981]
NCU15686  5S ribosomal RNA [KO:K01981]
NCU15658  5S ribosomal RNA [KO:K01981]
NCU15601  5S ribosomal RNA [KO:K01981]
Reference
  Authors
Freed EF, Bleichert F, Dutca LM, Baserga SJ
  Title
When ribosomes go bad: diseases of ribosome biogenesis.
  Journal
Mol Biosyst 6:481-93 (2010)
DOI:10.1039/b919670f
Reference
  Authors
Perez-Fernandez J, Roman A, De Las Rivas J, Bustelo XR, Dosil M
  Title
The 90S preribosome is a multimodular structure that is assembled through a hierarchical mechanism.
  Journal
Mol Cell Biol 27:5414-29 (2007)
DOI:10.1128/MCB.00380-07
Reference
  Authors
Strunk BS, Karbstein K
  Title
Powering through ribosome assembly.
  Journal
RNA 15:2083-104 (2009)
DOI:10.1261/rna.1792109
Reference
  Authors
Granneman S, Baserga SJ
  Title
Ribosome biogenesis: of knobs and RNA processing.
  Journal
Exp Cell Res 296:43-50 (2004)
DOI:10.1016/j.yexcr.2004.03.016
Reference
  Authors
Kressler D, Hurt E, Bassler J
  Title
Driving ribosome assembly.
  Journal
Biochim Biophys Acta 1803:673-83 (2010)
DOI:10.1016/j.bbamcr.2009.10.009
Related
pathway
ncr03010  Ribosome
KO pathway
ko03008   
LinkDB

DBGET integrated database retrieval system